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gptkbp:instanceOf
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biological data
|
|
gptkbp:analyzes
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bioinformatics tools
|
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gptkbp:canBe
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gptkb:Google_Cloud_Platform
gptkb:Perl
gptkb:Python
gptkb:Seven_Bridges
gptkb:Windows
gptkb:fish
gptkb:Cromwell
gptkb:Picard
gptkb:Sleuth
gptkb:MacOS
gptkb:Unix
gptkb:galaxy
gptkb:Bioconductor
gptkb:BEDTools
gptkb:Ballgown
gptkb:BaseSpace
gptkb:CLC_Genomics_Workbench
gptkb:Cutadapt
gptkb:DESeq2
gptkb:FastQC
gptkb:GATK
gptkb:GenePattern
gptkb:HISAT2
gptkb:HTSeq
gptkb:Illumina_BaseSpace
gptkb:Kallisto
gptkb:Limma
gptkb:MultiQC
gptkb:Nextflow
gptkb:Partek_Flow
gptkb:RSeQC
gptkb:Samtools
gptkb:SeqMonk
gptkb:Snakemake
gptkb:StringTie
gptkb:TopHat
gptkb:Trimmomatic
gptkb:WDL
gptkb:edgeR
gptkb:featureCounts
gptkb:nf-core
gptkb:tximport
gptkb:Amazon_Web_Services
gptkb:Linux
gptkb:STAR
gptkb:DNAnexus
gptkb:Microsoft_Azure
gptkb:CWL
R
Cufflinks
Cloud computing platforms
Shell scripts
|
|
gptkbp:contains
|
expression counts
sequence reads
|
|
gptkbp:depot
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gptkb:SRA
gptkb:ENA
gptkb:GEO
|
|
gptkbp:format
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gptkb:FASTQ
gptkb:SAM
BAM
|
|
gptkbp:generation
|
RNA sequencing
|
|
https://www.w3.org/2000/01/rdf-schema#label
|
RNA-seq data
|
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gptkbp:inputFor
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alternative splicing analysis
differential expression analysis
transcriptome assembly
|
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gptkbp:relatedTo
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next-generation sequencing
transcriptomics
|
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gptkbp:requires
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quantification
quality control
normalization
read alignment
|
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gptkbp:usedFor
|
gene expression analysis
|
|
gptkbp:visualizes
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gptkb:IGV
gptkb:UCSC_Genome_Browser
|
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gptkbp:bfsParent
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gptkb:ENCODE_Project
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gptkbp:bfsLayer
|
5
|