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gptkbp:instanceOf
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gptkb:software
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gptkbp:application
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data preprocessing
genotyping
sequence data analysis
variant discovery
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gptkbp:category
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gptkb:software
genomics
bioinformatics
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gptkbp:citation
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McKenna A, et al. Genome Res. 2010;20(9):1297-303.
Van der Auwera GA, et al. Curr Protoc Bioinformatics. 2013;43:11.10.1-11.10.33.
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gptkbp:developer
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gptkb:Broad_Institute
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gptkbp:firstReleased
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2010
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gptkbp:fullName
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gptkb:Genome_Analysis_Toolkit
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https://www.w3.org/2000/01/rdf-schema#label
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GATK
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gptkbp:latestReleaseVersion
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4.4.0.0
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gptkbp:license
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gptkb:BSD_3-Clause
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gptkbp:notableTool
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gptkb:BaseRecalibrator
gptkb:HaplotypeCaller
gptkb:Mutect2
gptkb:VariantFiltration
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gptkbp:operatingSystem
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gptkb:Windows
gptkb:macOS
gptkb:Linux
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gptkbp:programmingLanguage
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gptkb:Java
gptkb:Python
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gptkbp:repository
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https://github.com/broadinstitute/gatk
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gptkbp:supportsFormat
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gptkb:CRAM
gptkb:FASTQ
BAM
VCF
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gptkbp:usedFor
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next-generation sequencing data
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gptkbp:website
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https://gatk.broadinstitute.org/
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gptkbp:bfsParent
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gptkb:RNA-seq_data
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gptkbp:bfsLayer
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6
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