UCSC Genome Browser

URI: https://gptkb.org/entity/UCSC_Genome_Browser
GPTKB entity
AI-created image of UCSC Genome Browser
AI-created image
Statements (81)
Predicate Object
gptkbp:instanceOf gptkb:genome_browser
gptkbp:citation gptkb:Kent_WJ_et_al.,_Genome_Res._2002_May;12(6):996-1006.
https://doi.org/10.1101/gr.229102
gptkbp:dataSource gptkb:ArrayExpress
gptkb:COSMIC
gptkb:ClinVar
gptkb:DGV
gptkb:ENCODE
gptkb:ExAC
gptkb:FANTOM
gptkb:GENCODE
gptkb:GENSCAN
gptkb:GTEx
gptkb:GWAS_Catalog
gptkb:Gene_Ontology
gptkb:HGNC
gptkb:Human_Epigenome_Atlas
gptkb:MGC
gptkb:MIM
gptkb:NCBI
gptkb:OMIM
gptkb:PDB
gptkb:PeptideAtlas
gptkb:PhastCons
gptkb:PhyloP
gptkb:ProteomicsDB
gptkb:RefSeq
gptkb:RepeatMasker
gptkb:Roadmap_Epigenomics
gptkb:SNPedia
gptkb:UCSC_Genes
gptkb:UniProt
gptkb:VISTA_Enhancer_Browser
gptkb:dbEST
gptkb:dbGAP
gptkb:dbGaP
gptkb:dbMHC
gptkb:dbNSFP
gptkb:dbPTM
gptkb:dbRIP
gptkb:dbSNP
gptkb:dbSuper
gptkb:dbTF
gptkb:dbVar
gptkb:miRBase
gptkb:1000_Genomes_Project
gptkb:Ensembl
gptkb:TCGA
gptkb:gnomAD
dbEM
gptkbp:developedBy gptkb:University_of_California,_Santa_Cruz
gptkbp:launched 2000
gptkbp:license free for academic and non-profit use
gptkbp:organism gptkb:entomologist
gptkb:human
gptkb:mouse
gptkb:right
gptkb:C._elegans
gptkb:zebrafish
gptkb:yeast
many other species
gptkbp:primaryUse visualization of genome assemblies
gptkbp:provides gptkb:BLAT_alignment_tool
gptkb:Table_Browser
data downloads
comparative genomics tools
custom track upload
genome annotation tracks
public sessions
sequence data
track hubs
gptkbp:usedBy genomics researchers
gptkbp:usedFor clinical genomics
comparative genomics
exploring regulatory elements
studying genetic variation
visualizing gene structure
gptkbp:website https://genome.ucsc.edu/
gptkbp:bfsParent gptkb:Human_Genome_Project
gptkbp:bfsLayer 4
https://www.w3.org/2000/01/rdf-schema#label UCSC Genome Browser