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gptkbp:instanceOf
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gptkb:software
splice-aware aligner
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gptkbp:application
|
genome alignment
spliced alignment
transcriptome alignment
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|
gptkbp:citation
|
>10,000
Kim D, Paggi JM, Park C, Bennett C, Salzberg SL. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nat Biotechnol. 2019 Aug;37(8):907-915.
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|
gptkbp:developer
|
gptkb:Daehwan_Kim
gptkb:Steven_L._Salzberg
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gptkbp:feature
|
low memory usage
fast alignment
support for SNPs and indels
support for alternative splicing
support for large genomes
support for transcript assembly
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gptkbp:firstReleased
|
2015
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|
gptkbp:format
|
gptkb:FASTQ
gptkb:SAM
BAM
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gptkbp:fundedBy
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gptkb:National_Institutes_of_Health
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gptkbp:hasWrittenFor
|
gptkb:RNA-seq_data
|
|
https://www.w3.org/2000/01/rdf-schema#label
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HISAT2
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gptkbp:latestReleaseVersion
|
2021-08-12
2.2.1
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gptkbp:license
|
gptkb:GPLv3
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gptkbp:operatingSystem
|
gptkb:Windows
gptkb:macOS
gptkb:Linux
|
|
gptkbp:predecessor
|
gptkb:HISAT
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|
gptkbp:programmingLanguage
|
gptkb:C++
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|
gptkbp:repository
|
https://github.com/DaehwanKimLab/hisat2
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|
gptkbp:software
|
gptkb:Bowtie2
gptkb:TopHat2
gptkb:StringTie
gptkb:STAR
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|
gptkbp:successor
|
gptkb:HISAT3
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|
gptkbp:supportsAlgorithm
|
gptkb:Burrows-Wheeler_transform
gptkb:Ferragina-Manzini_index
graph FM index
|
|
gptkbp:usedIn
|
genomics research
cancer genomics
plant genomics
clinical genomics
microbial genomics
transcriptomics research
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|
gptkbp:website
|
https://daehwankimlab.github.io/hisat2/
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gptkbp:bfsParent
|
gptkb:RNA-seq_data
|
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gptkbp:bfsLayer
|
6
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