Statements (62)
| Predicate | Object |
|---|---|
| gptkbp:instanceOf |
gptkb:software
|
| gptkbp:analyzes |
BAM files
SAM files |
| gptkbp:availableOn |
gptkb:GitHub
gptkb:PyPI |
| gptkbp:developer |
gptkb:Liguo_Wang
gptkb:Xinghua_Shi |
| gptkbp:documentation |
http://rseqc.sourceforge.net/
|
| gptkbp:feature |
BAM file statistics
BAM file statistics summary BAM stat plot BAM stat summary GC content analysis GC content plot NVC plot RNA degradation plot RNA degradation summary RNA integrity evaluation gene body coverage gene body coverage plot gene body coverage plot summary gene body coverage summary infer experiment infer experiment plot infer experiment summary inner distance calculation inner distance plot inner distance summary insertion size estimation insertion size summary junction annotation junction annotation plot junction annotation summary junction saturation analysis junction saturation plot junction saturation summary read GC content analysis read GC summary read NVC (nucleotide composition) analysis read NVC summary read distribution analysis read distribution over genomic features read distribution over genomic features summary read distribution plot read distribution summary read duplication analysis read duplication plot read duplication rate read duplication rate summary read duplication summary read quality assessment read quality plot read quality summary strand specificity assessment strand specificity summary |
| gptkbp:firstReleased |
2012
|
| https://www.w3.org/2000/01/rdf-schema#label |
RSeQC
|
| gptkbp:license |
gptkb:GNU_GPL_v3
|
| gptkbp:usedFor |
RNA-seq quality control
|
| gptkbp:writtenBy |
gptkb:Python
|
| gptkbp:bfsParent |
gptkb:RNA-seq_data
|
| gptkbp:bfsLayer |
6
|