|
gptkbp:instanceOf
|
gptkb:software
|
|
gptkbp:author
|
gptkb:Aaron_Lun
gptkb:Gordon_Smyth
gptkb:Yunshun_Chen
|
|
gptkbp:citation
|
Robinson MD, McCarthy DJ, Smyth GK (2010). edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26, 139-140.
|
|
gptkbp:documentation
|
https://bioconductor.org/packages/release/bioc/html/edgeR.html
|
|
gptkbp:feature
|
gptkb:data_visualization
gptkb:generalized_linear_models
normalization
batch effect correction
dispersion estimation
multiple testing correction
support for complex experimental designs
|
|
gptkbp:firstReleased
|
2010
|
|
gptkbp:format
|
gptkb:group_of_people
data frame
table
plots
|
|
https://www.w3.org/2000/01/rdf-schema#label
|
edgeR
|
|
gptkbp:latestReleaseVersion
|
2023
|
|
gptkbp:license
|
gptkb:GPL-2
|
|
gptkbp:maintainedBy
|
gptkb:Bioconductor
|
|
gptkbp:operatingSystem
|
cross-platform
|
|
gptkbp:platform
|
gptkb:Bioconductor
|
|
gptkbp:programmingLanguage
|
R
|
|
gptkbp:relatedTo
|
gptkb:limma
gptkb:DESeq2
|
|
gptkbp:statisticalModel
|
gptkb:negative_binomial_distribution
|
|
gptkbp:supportsInputType
|
count data
|
|
gptkbp:usedFor
|
differential expression analysis
RNA-Seq data analysis
|
|
gptkbp:bfsParent
|
gptkb:RNA-seq_data
|
|
gptkbp:bfsLayer
|
6
|