BEDTools

GPTKB entity

Statements (30)
Predicate Object
gptkbp:instanceOf gptkb:software
gptkbp:citation Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics. 2010 Mar 15;26(6):841-2.
gptkbp:developer gptkb:Aaron_Quinlan
gptkbp:feature Windows API
sort
merge
complement
coverage
closest
shuffle
intersect
groupby
slop
subtract
gptkbp:firstReleased 2010
gptkbp:format gptkb:BED
gptkb:GFF
BAM
VCF
https://www.w3.org/2000/01/rdf-schema#label BEDTools
gptkbp:license gptkb:GPLv2
gptkbp:operatingSystem Unix-like
gptkbp:programmingLanguage gptkb:C++
gptkbp:repository https://github.com/arq5x/bedtools2
gptkbp:usedFor bioinformatics analysis
genome arithmetic
genomic interval manipulation
gptkbp:website https://bedtools.readthedocs.io/
gptkbp:bfsParent gptkb:RNA-seq_data
gptkbp:bfsLayer 6