|
gptkbp:instanceOf
|
file format
|
|
gptkbp:canBeCompressedAs
|
.fastq.gz
.fq.gz
|
|
gptkbp:commonIn
|
genomics
bioinformatics
next-generation sequencing
|
|
gptkbp:contains
|
quality values
raw sequence letters
sequence identifier
|
|
gptkbp:developedBy
|
gptkb:Wellcome_Trust_Sanger_Institute
|
|
gptkbp:fileExtension
|
.fastq
.fq
|
|
gptkbp:firstLineBeginsWith
|
@
|
|
https://www.w3.org/2000/01/rdf-schema#label
|
FASTQ file format
|
|
gptkbp:introducedIn
|
2000s
|
|
gptkbp:lineStructure
|
4 lines per sequence
|
|
gptkbp:mayInclude
|
gptkb:UMIs_(Unique_Molecular_Identifiers)
barcodes
paired-end reads
single-end reads
|
|
gptkbp:qualityEncoding
|
ASCII
Phred quality score
|
|
gptkbp:relatedTo
|
gptkb:FASTA_file_format
|
|
gptkbp:specifies
|
sequence quality for each base
|
|
gptkbp:standardizedBy
|
yes
community practice
formal standards body
|
|
gptkbp:supportedBy
|
gptkb:Picard
gptkb:galaxy
gptkb:Bowtie
gptkb:SAMtools
gptkb:BEDTools
gptkb:Cutadapt
gptkb:GATK
gptkb:HISAT2
gptkb:IGV
gptkb:MultiQC
gptkb:TopHat
gptkb:Trimmomatic
gptkb:UCSC_Genome_Browser
gptkb:Biopython
gptkb:Minimap2
gptkb:FASTQC
gptkb:Fastp
gptkb:NanoFilt
gptkb:Porechop
gptkb:SRA_Toolkit
gptkb:STAR_aligner
gptkb:SeqIO
gptkb:SeqKit
gptkb:Seqtk
gptkb:bcl2fastq
gptkb:seqtk
BWA
Cufflinks
|
|
gptkbp:thirdLineBeginsWith
|
+
|
|
gptkbp:usedBy
|
gptkb:BGI_sequencing
Illumina sequencing
Oxford Nanopore sequencing
|
|
gptkbp:usedFor
|
storing nucleotide sequences
storing biological sequence data
storing quality scores
|
|
gptkbp:usedIn
|
genome assembly
sequence alignment
variant calling
RNA-Seq analysis
|
|
gptkbp:bfsParent
|
gptkb:Databricks_Runtime_for_Genomics
|
|
gptkbp:bfsLayer
|
7
|