Statements (33)
| Predicate | Object |
|---|---|
| gptkbp:instanceOf |
gptkb:software
RNA-Seq aligner |
| gptkbp:citation |
Dobin A, et al. STAR: ultrafast universal RNA-seq aligner. Bioinformatics. 2013 Jan 1;29(1):15-21.
|
| gptkbp:developer |
Alexander Dobin
|
| gptkbp:feature |
high accuracy
high speed splice-aware alignment supports annotation-guided alignment supports detection of novel splice junctions supports gapped alignment |
| gptkbp:firstReleased |
2013
|
| gptkbp:format |
gptkb:FASTQ
gptkb:SAM BAM |
| https://www.w3.org/2000/01/rdf-schema#label |
STAR aligner
|
| gptkbp:license |
gptkb:GPLv3
|
| gptkbp:mainFunction |
ultrafast RNA-Seq read alignment
|
| gptkbp:operatingSystem |
gptkb:Windows
gptkb:macOS gptkb:Linux |
| gptkbp:programmingLanguage |
gptkb:C++
|
| gptkbp:software |
gptkb:Bowtie2
gptkb:HISAT2 gptkb:TopHat |
| gptkbp:usedBy |
biologists
bioinformaticians genomics researchers |
| gptkbp:usedFor |
RNA-Seq data analysis
gene expression quantification transcriptome mapping |
| gptkbp:website |
https://github.com/alexdobin/STAR
|
| gptkbp:bfsParent |
gptkb:FASTQ_file_format
|
| gptkbp:bfsLayer |
8
|