Statements (100)
| Predicate | Object |
|---|---|
| gptkbp:instanceOf |
file format
|
| gptkbp:developedBy |
Sequence Ontology Project
|
| gptkbp:extendsTo |
.gff3
|
| gptkbp:field |
9
|
| gptkbp:fieldSeparator |
tab
|
| gptkbp:firstReleased |
2005
|
| gptkbp:fullName |
General Feature Format version 3
|
| https://www.w3.org/2000/01/rdf-schema#label |
GFF3
|
| gptkbp:relatedTo |
GTF
BED format |
| gptkbp:replacedBy |
gptkb:GFF2
|
| gptkbp:specifies |
https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md
|
| gptkbp:standardizedBy |
Sequence Ontology Project
|
| gptkbp:supports |
attributes
hierarchical features multiple feature types |
| gptkbp:usedBy |
gptkb:FlyBase
gptkb:Apollo gptkb:Artemis gptkb:IMG gptkb:Phytozome gptkb:BioPerl gptkb:galaxy gptkb:EMBL gptkb:NCBI gptkb:RefSeq gptkb:WormBase gptkb:SAMtools gptkb:BEDTools gptkb:HTSeq gptkb:IGV gptkb:StringTie gptkb:TAIR gptkb:Ensembl gptkb:GenBank gptkb:UCSC_Genome_Browser gptkb:BioJava gptkb:BioPython gptkb:BioRuby gptkb:DDBJ gptkb:JGI gptkb:Glimmer gptkb:MG-RAST gptkb:Ensembl_Bacteria gptkb:Ensembl_Fungi gptkb:Ensembl_Genomes gptkb:Ensembl_Metazoa gptkb:Ensembl_Plants gptkb:Ensembl_Protists gptkb:Gramene gptkb:PATRIC gptkb:VectorBase gptkb:VEP Cufflinks AGAT AUGUSTUS BEDOPS BioJulia GMOD GeneMark Geneious GenomeTools JBrowse MAKER NCBI Datasets NCBI Eukaryotic Genome Annotation Pipeline NCBI GFF3toBED NCBI GFF3toEMBL NCBI GFF3toGFF2 NCBI GFF3toGTF NCBI GFF3toGTF10 NCBI GFF3toGTF2 NCBI GFF3toGTF3 NCBI GFF3toGTF4 NCBI GFF3toGTF5 NCBI GFF3toGTF6 NCBI GFF3toGTF7 NCBI GFF3toGTF8 NCBI GFF3toGTF9 NCBI GFF3toGenBank NCBI Genome Data Viewer NCBI Genome Workbench NCBI Gnomon NCBI Prokaryotic Genome Annotation Pipeline NCBI RefSeq Genome Annotation Pipeline NCBI Splign NCBI tbl2asn Prokka RAST SnpEff Tuxedo Suite WebApollo gffcompare gffread gffutils |
| gptkbp:usedFor |
genome annotation
storing genomic features |
| gptkbp:usedIn |
bioinformatics
|
| gptkbp:bfsParent |
gptkb:InterPro
|
| gptkbp:bfsLayer |
6
|