GENCODE reference gene sets

URI: https://gptkb.org/entity/GENCODE_reference_gene_sets
GPTKB entity
Statements (49)
Predicate Object
gptkbp:instanceOf gene annotation project
gptkbp:availableOn https://www.gencodegenes.org/
gptkbp:citation gptkb:Frankish_et_al.,_Nucleic_Acids_Research,_2023
gptkbp:collaboratesWith gptkb:HAVANA_team
gptkb:RefSeq
gptkb:UCSC_Genome_Browser_team
gptkb:Ensembl
gptkbp:contains non-coding genes
protein-coding genes
pseudogenes
lncRNAs
miRNAs
rRNAs
snRNAs
snoRNAs
tRNAs
gptkbp:developedBy gptkb:GENCODE_consortium
gptkbp:firstReleased 2009
gptkbp:format gptkb:FASTA
gptkb:GFF3
GTF
gptkbp:fundedBy gptkb:NHGRI
gptkb:Wellcome_Trust
https://www.w3.org/2000/01/rdf-schema#label GENCODE reference gene sets
gptkbp:latestReleaseVersion GENCODE 45 (as of 2024)
gptkbp:license CC BY 4.0
gptkbp:partOf gptkb:ENCODE_project
gptkbp:provides automated annotation
comprehensive gene annotation
high-quality transcript models
manual curation
gptkbp:species gptkb:Mus_musculus
gptkb:Homo_sapiens
gptkbp:updated regularly
gptkbp:usedBy gptkb:GENCODE_website
gptkb:Ensembl
gptkb:UCSC_Genome_Browser
gptkbp:usedFor genome annotation
transcript annotation
gene identification
gptkbp:usedIn clinical genomics
comparative genomics
functional genomics
RNA-seq analysis
variant interpretation
bioinformatics pipelines
genome browsers
gptkbp:bfsParent gptkb:GENCODE
gptkbp:bfsLayer 6