Statements (49)
| Predicate | Object |
|---|---|
| gptkbp:instanceOf |
metagenomics analysis server
|
| gptkbp:allows |
amplicon sequencing data
shotgun metagenomic data metatranscriptomic data |
| gptkbp:API |
RESTful API
|
| gptkbp:citation |
Meyer F, et al. BMC Bioinformatics 2008, 9:386
Wilke A, et al. Nucleic Acids Res. 2016 Jul 8;44(W1):W84-9. over 5,000 publications (as of 2023) |
| gptkbp:dataSource |
public metagenome repository
|
| gptkbp:developedBy |
gptkb:Argonne_National_Laboratory
|
| gptkbp:format |
gptkb:FASTQ
gptkb:FASTA gptkb:SFF |
| gptkbp:freeFrom |
academic use
|
| gptkbp:fullName |
Metagenomics Rapid Annotation using Subsystem Technology
|
| gptkbp:fundedBy |
gptkb:U.S._Department_of_Energy
|
| https://www.w3.org/2000/01/rdf-schema#label |
MG-RAST
|
| gptkbp:integratesWith |
gptkb:EBI_Metagenomics
gptkb:SEED_database IMG/M |
| gptkbp:interface |
web-based
|
| gptkbp:launched |
2007
|
| gptkbp:location |
gptkb:Argonne,_Illinois,_USA
|
| gptkbp:numberOfDatasets |
over 400,000 (as of 2023)
|
| gptkbp:offers |
project management tools
collaborative features interactive visualizations downloadable results |
| gptkbp:pipeline |
quality control
functional annotation comparative analysis taxonomic annotation feature prediction |
| gptkbp:provides |
data storage
data sharing automated annotation of metagenomes comparative analysis tools |
| gptkbp:purpose |
metagenomic data analysis
|
| gptkbp:supports |
public and private datasets
metadata standards MIxS metadata |
| gptkbp:targetUser |
over 25,000 (as of 2023)
|
| gptkbp:usedBy |
biomedical researchers
environmental scientists microbiome researchers |
| gptkbp:website |
https://www.mg-rast.org/
|
| gptkbp:bfsParent |
gptkb:Earth_Microbiome_Project
gptkb:GFF3 |
| gptkbp:bfsLayer |
7
|