ENCODE Project Consortium

URI: https://gptkb.org/entity/ENCODE_Project_Consortium

GPTKB entity

Statements (72)

Predicate	Object
gptkbp:instanceOf	scientific consortium
gptkbp:availableOn	gptkb:ENCODE_portal gptkb:NCBI_GEO gptkb:Ensembl gptkb:UCSC_Genome_Browser
gptkbp:collaboratesWith	international research groups
gptkbp:contributedTo	functional annotation of the human genome identification of regulatory elements publicly available genomic data genome-wide mapping of chromatin states understanding of non-coding DNA
gptkbp:country	gptkb:United_States
gptkbp:dataPolicy	open access
gptkbp:dataReleaseFrequency	regularly updated
gptkbp:field	genomics bioinformatics
gptkbp:focus	epigenomics gene expression transcription factors DNA methylation chromatin structure functional genomics histone modification RNA elements regulatory elements
gptkbp:founded	2003
gptkbp:fullName	gptkb:Encyclopedia_of_DNA_Elements_Project_Consortium
gptkbp:fundedBy	gptkb:National_Institutes_of_Health gptkb:National_Human_Genome_Research_Institute
gptkbp:goal	identify all functional elements in the human genome
https://www.w3.org/2000/01/rdf-schema#label	ENCODE Project Consortium
gptkbp:memberSchool	gptkb:Broad_Institute gptkb:Harvard_University gptkb:Stanford_University gptkb:University_of_California,_San_Diego gptkb:University_of_California,_Santa_Cruz gptkb:University_of_Washington gptkb:Washington_University_in_St._Louis gptkb:Yale_University gptkb:University_of_Massachusetts_Medical_School gptkb:European_Bioinformatics_Institute
gptkbp:notablePublication	gptkb:The_ENCODE_Project_Consortium._An_integrated_encyclopedia_of_DNA_elements_in_the_human_genome._Nature._2012. gptkb:The_ENCODE_Project_Consortium._Expanded_encyclopaedias_of_DNA_elements_in_the_human_and_mouse_genomes._Nature._2020. gptkb:The_ENCODE_Project_Consortium._Identification_and_analysis_of_functional_elements_in_1%_of_the_human_genome_by_the_ENCODE_pilot_project._Nature._2007.
gptkbp:organism	gptkb:Mus_musculus gptkb:Homo_sapiens gptkb:Caenorhabditis_elegans gptkb:Drosophila_melanogaster
gptkbp:period	pilot phase (2003-2007) production phase (2007-2012) current phase (2020-present) expansion phase (2012-2020)
gptkbp:producedResource	gptkb:ENCODE_data_portal ENCODE datasets ENCODE publications
gptkbp:publishedIn	gptkb:Nature gptkb:science gptkb:Genome_Research
gptkbp:type	gptkb:ATAC-seq gptkb:Hi-C gptkb:RNA-seq DNA methylation histone modification transcription factor binding ChIP-seq DNase-seq chromatin accessibility
gptkbp:website	https://www.encodeproject.org/
gptkbp:bfsParent	gptkb:Nature_2007_ENCODE_pilot_paper gptkb:Nature_2012_ENCODE_integrative_analysis gptkb:Nature_2020_ENCODE_phase_3_paper
gptkbp:bfsLayer	6