Statements (64)
| Predicate | Object |
|---|---|
| gptkbp:instanceOf |
biological technique
|
| gptkbp:analyzes |
bioinformatics pipelines
cDNA alignment algorithms differential expression software quantification tools |
| gptkbp:citation |
gptkb:science
gptkb:Nature_Methods gptkb:Nature_Biotechnology |
| gptkbp:developedBy |
mid-2000s
|
| gptkbp:enables |
spatial transcriptomics
single-cell transcriptomics bulk RNA analysis |
| gptkbp:firstPublished |
2008
|
| gptkbp:fullName |
RNA sequencing
|
| https://www.w3.org/2000/01/rdf-schema#label |
RNA-seq
|
| gptkbp:material |
gptkb:gene
|
| gptkbp:output |
sequence reads
expression levels transcript structures |
| gptkbp:platform |
gptkb:Ion_Torrent
gptkb:Illumina gptkb:Pacific_Biosciences gptkb:Oxford_Nanopore |
| gptkbp:relatedTo |
gptkb:DNA-seq
gptkb:ATAC-seq gptkb:single-cell_RNA-seq epigenomics genomics proteomics microarray transcriptomics ChIP-seq |
| gptkbp:replacedBy |
microarray-based transcriptomics
|
| gptkbp:requires |
reverse transcription
next-generation sequencing library preparation |
| gptkbp:type |
high-throughput sequencing data
|
| gptkbp:usedFor |
alternative splicing analysis
transcriptome analysis RNA editing detection differential gene expression analysis fusion gene detection gene expression quantification identification of novel transcripts non-coding RNA discovery |
| gptkbp:usedIn |
cancer research
developmental biology immunology microbiology neuroscience plant biology personalized medicine drug development biomarker discovery clinical diagnostics |
| gptkbp:bfsParent |
gptkb:gene_regulatory_networks
gptkb:ENCODE gptkb:GTEx gptkb:GTEx_Project gptkb:Expression_Atlas gptkb:Human_Protein_Atlas gptkb:TOPMed_data |
| gptkbp:bfsLayer |
6
|