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gptkbp:instanceOf
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gptkb:software
|
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gptkbp:author
|
gptkb:Arian_Smit
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gptkbp:category
|
genomics
sequence analysis
|
|
gptkbp:citation
|
Smit, AFA, Hubley, R & Green, P. RepeatMasker Open-4.0, 2013-2015.
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gptkbp:dependsOn
|
gptkb:TRF
gptkb:RMBlast
gptkb:WUBLAST
gptkb:cross_match
gptkb:ncbi-blast+
gptkb:HMMER
|
|
gptkbp:detects
|
DNA transposons
LINEs
LTR elements
RNA elements
SINEs
low complexity DNA
other repetitive elements
satellite DNA
simple repeats
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|
gptkbp:documentation
|
http://www.repeatmasker.org/RepeatMaskerHelp.html
|
|
gptkbp:firstReleased
|
1996
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gptkbp:format
|
gptkb:FASTA
annotation table
masked FASTA
|
|
https://www.w3.org/2000/01/rdf-schema#label
|
RepeatMasker
|
|
gptkbp:latestReleaseVersion
|
2023-10-19
open-4.1.5
|
|
gptkbp:license
|
open source
|
|
gptkbp:maintainedBy
|
gptkb:Institute_for_Systems_Biology
|
|
gptkbp:operatingSystem
|
gptkb:Windows
gptkb:macOS
gptkb:Linux
|
|
gptkbp:supports
|
gptkb:graphical_user_interface
|
|
gptkbp:supportsDatabase
|
gptkb:Dfam
gptkb:Repbase
|
|
gptkbp:usedBy
|
comparative genomics studies
genome annotation pipelines
repeat content analysis
|
|
gptkbp:usedFor
|
identifying repetitive elements in DNA sequences
masking repetitive DNA
|
|
gptkbp:website
|
http://www.repeatmasker.org/
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gptkbp:writtenBy
|
gptkb:Perl
C
|
|
gptkbp:bfsParent
|
gptkb:UCSC_Genome_Browser
|
|
gptkbp:bfsLayer
|
5
|