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gptkbp:instanceOf
|
cancer genomics project
|
|
gptkbp:abbreviation
|
gptkb:TCGA
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gptkbp:collaboratesWith
|
research institutions worldwide
|
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gptkbp:dataSource
|
gptkb:dbGaP
gptkb:Broad_GDAC
gptkb:FireBrowse
gptkb:TCGA_Data_Portal_(retired)
gptkb:UCSC_Xena
gptkb:cBioPortal
gptkb:Genomic_Data_Commons
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gptkbp:firstReleased
|
2006
|
|
gptkbp:focus
|
cancer genomics
|
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gptkbp:format
|
BAM
image files
VCF
clinical tables
|
|
gptkbp:fullName
|
gptkb:The_Cancer_Genome_Atlas
|
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gptkbp:fundedBy
|
gptkb:U.S._government
|
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gptkbp:goal
|
catalog genetic mutations responsible for cancer
|
|
https://www.w3.org/2000/01/rdf-schema#label
|
TCGA
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gptkbp:impact
|
enabled large-scale cancer genomics research
|
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gptkbp:launched
|
gptkb:National_Cancer_Institute
gptkb:National_Human_Genome_Research_Institute
|
|
gptkbp:legacyDataPortal
|
https://portal.gdc.cancer.gov/legacy-archive
|
|
gptkbp:notableCancerTypes
|
gptkb:cancer
gptkb:glioblastoma
colon cancer
|
|
gptkbp:numberOfCancerTypes
|
33
|
|
gptkbp:numberOfSamples
|
over 20,000
|
|
gptkbp:publishedIn
|
hundreds of scientific papers
|
|
gptkbp:relatedTo
|
gptkb:International_Cancer_Genome_Consortium
|
|
gptkbp:releaseDate
|
phased releases from 2008 to 2016
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|
gptkbp:status
|
completed
|
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gptkbp:type
|
clinical data
genomic data
DNA methylation
whole genome sequencing
imaging data
RNA-Seq
SNP array
clinical metadata
copy number variation
miRNA expression
molecular data
protein expression
whole exome sequencing
|
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gptkbp:usedFor
|
open access for many datasets
|
|
gptkbp:website
|
https://www.cancer.gov/about-nci/organization/ccg/research/structural-genomics/tcga
|
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gptkbp:yearCompleted
|
2017
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gptkbp:bfsParent
|
gptkb:The_Cancer_Genome_Atlas
|
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gptkbp:bfsLayer
|
4
|