|
gptkbp:instanceOf
|
gptkb:database
|
|
gptkbp:citation
|
gptkb:ENCODE_Project_Consortium,_Nature,_2012
gptkb:ENCODE_Project_Consortium,_Nature,_2020
|
|
gptkbp:documentation
|
https://www.encodeproject.org/help/
|
|
gptkbp:focusesOn
|
functional elements of the human genome
|
|
gptkbp:fundedBy
|
gptkb:National_Institutes_of_Health
gptkb:National_Human_Genome_Research_Institute
|
|
gptkbp:hasGenomeBuild
|
gptkb:GRCh37
gptkb:mm10
gptkb:mm9
gptkb:hg19
gptkb:GRCh38
hg38
|
|
gptkbp:hasType
|
gptkb:ATAC-seq
gptkb:RNA-seq
gene expression
DNA methylation
histone modification
transcription factor binding
ChIP-seq
DNase-seq
chromatin accessibility
chromatin state
long-range chromatin interactions
|
|
gptkbp:hostedBy
|
gptkb:NCBI
gptkb:Ensembl
gptkb:UCSC_Genome_Browser
gptkb:ENCODE_Portal
|
|
https://www.w3.org/2000/01/rdf-schema#label
|
ENCODE database
|
|
gptkbp:license
|
open access
|
|
gptkbp:organism
|
gptkb:Mus_musculus
gptkb:Homo_sapiens
gptkb:Caenorhabditis_elegans
gptkb:Drosophila_melanogaster
|
|
gptkbp:partOf
|
gptkb:ENCODE_Project
|
|
gptkbp:releaseDate
|
2003
2007
2012
2020
|
|
gptkbp:supportedBy
|
gptkb:REST_API
gptkb:search_engine
download API
|
|
gptkbp:supportsFormat
|
gptkb:FASTQ
gptkb:bigWig
gptkb:JSON
gptkb:BED
XML
BAM
CSV
GTF
TSV
|
|
gptkbp:usedBy
|
genomics researchers
|
|
gptkbp:usedFor
|
bioinformatics
genome annotation
comparative genomics
functional genomics
variant interpretation
disease association studies
transcriptional regulation analysis
epigenomics studies
regulatory element discovery
|
|
gptkbp:website
|
https://www.encodeproject.org/
|
|
gptkbp:bfsParent
|
gptkb:DNase-seq_data
|
|
gptkbp:bfsLayer
|
6
|