ENCODE Data Coordination Center
GPTKB entity
Statements (61)
| Predicate | Object |
|---|---|
| gptkbp:instanceOf |
data coordination center
|
| gptkbp:citation |
ENCODE Project Consortium. (2012). An integrated encyclopedia of DNA elements in the human genome. Nature, 489(7414), 57–74.
Sloan, C. A., et al. (2016). ENCODE data at the ENCODE portal. Nucleic Acids Research, 44(D1), D726–D732. |
| gptkbp:collaboratesWith |
gptkb:modENCODE
gptkb:ENCODE_Consortium modERN |
| gptkbp:focus |
epigenomics
genomics functional genomics |
| gptkbp:fundedBy |
gptkb:National_Human_Genome_Research_Institute
|
| https://www.w3.org/2000/01/rdf-schema#label |
ENCODE Data Coordination Center
|
| gptkbp:locatedIn |
gptkb:Stanford_University
|
| gptkbp:organism |
gptkb:Mus_musculus
gptkb:Homo_sapiens gptkb:Caenorhabditis_elegans gptkb:Drosophila_melanogaster |
| gptkbp:partOf |
gptkb:ENCODE_Project
|
| gptkbp:principalInvestigator |
gptkb:Jillian_M._Rowe
gptkb:J._Michael_Cherry gptkb:Michael_Snyder |
| gptkbp:provides |
API access
outreach data download data standards data visualization tools training materials metadata search quality metrics user documentation data submission portal public access to ENCODE data |
| gptkbp:role |
data management
data distribution data portal development metadata curation |
| gptkbp:startYear |
2012
|
| gptkbp:type |
gptkb:whole-genome_bisulfite_sequencing
gptkb:ATAC-seq gptkb:Hi-C gptkb:RNA-seq gene expression transcription factor binding sites cell lines tissues ChIP-seq DNase-seq chromatin interactions histone modifications primary cells reference epigenomes promoters long non-coding RNAs organisms enhancers functional elements genome-wide association study (GWAS) overlaps genomic annotations open chromatin regions |
| gptkbp:website |
https://www.encodeproject.org/
|
| gptkbp:bfsParent |
gptkb:ENCODE
|
| gptkbp:bfsLayer |
6
|