Ensembl | GPTKB v2

All labels observed (8)

Label	Occurrences
Ensembl canonical	9
Ensembl Genomes	3
Ensembl Bacteria	1
Ensembl Fungi	1
Ensembl Metazoa	1
Ensembl Plants	1
Ensembl Protists	1
Ensembl genome browser	1

How this entity was disambiguated

This entity first appeared as the object of triple T8482720 — resolving that mention is where its identity was fixed. The disambiguator weighed these candidate entities and picked the highlighted one (or “None”, minting a new entity). This is how homonymy is resolved: the same surface form can point to different entities.

NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07

Target entity: Ensembl
Context triple: [EMBL-EBI AlphaFold Protein Structure Database, relatedTo, Ensembl]

A. RefSeq
RefSeq is a curated, non-redundant collection of reference DNA, RNA, and protein sequences maintained by the National Center for Biotechnology Information for use in genome annotation and biological research.
B. GenBank
GenBank is a comprehensive public database of nucleotide sequences and their associated annotation, widely used as a primary resource for genetic and genomic research.
C. ENSB
ENSB is the ICAO airport code for Svalbard Airport, Longyear, the main air gateway to the Svalbard archipelago in Norway.
D. NCBI E-utilities API
The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
E. FlyBase
FlyBase is a comprehensive online database of genetic and genomic information for the fruit fly Drosophila and related species.
F. None of above. chosen
G. Unsure - the case is ambiguous/there is not enough information to decide.

NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07

Target entity: Ensembl
Target entity description: Ensembl is a comprehensive genome annotation and browsing platform that provides detailed, regularly updated genomic data for a wide range of species.

A. RefSeq
RefSeq is a curated, non-redundant collection of reference DNA, RNA, and protein sequences maintained by the National Center for Biotechnology Information for use in genome annotation and biological research.
B. GenBank
GenBank is a comprehensive public database of nucleotide sequences and their associated annotation, widely used as a primary resource for genetic and genomic research.
C. ENSB
ENSB is the ICAO airport code for Svalbard Airport, Longyear, the main air gateway to the Svalbard archipelago in Norway.
D. NCBI E-utilities API
The NCBI E-utilities API is a set of programmatic web services that allow automated querying, retrieval, and integration of data from NCBI databases such as PubMed.
E. FlyBase
FlyBase is a comprehensive online database of genetic and genomic information for the fruit fly Drosophila and related species.
F. None of above. chosen

Statements (59)

Predicate	Object
instanceOf	genome annotation platform ⓘ genome browser ⓘ
accessModel	free to use ⓘ
country	United Kingdom ⓘ
dataType	comparative genomics data ⓘ functional genomics data ⓘ gene annotation ⓘ genome annotation ⓘ regulatory annotation ⓘ transcript annotation ⓘ variation data ⓘ
developer	European Bioinformatics Institute ⓘ Wellcome Sanger Institute ⓘ
feature	BioMart data mining tool ⓘ linked to: biomaRt package FTP data downloads ⓘ Perl API ⓘ linked to: Perl REST API ⓘ gene trees ⓘ graphical genome browser ⓘ integrated external database cross-references ⓘ multiple genome alignments ⓘ programmatic API access ⓘ regulatory build ⓘ variant effect prediction ⓘ
field	bioinformatics ⓘ computational biology ⓘ genomics ⓘ
focus	comparative genomics ⓘ genetic variation ⓘ reference genome annotation ⓘ regulatory genomics ⓘ
hasSubProject	Ensembl Bacteria ⓘ linked to: Ensembl Ensembl Fungi ⓘ linked to: Ensembl Ensembl Genomes ⓘ linked to: Ensembl Ensembl Metazoa ⓘ linked to: Ensembl Ensembl Plants ⓘ linked to: Ensembl Ensembl Protists ⓘ linked to: Ensembl
license	open access ⓘ
operatedBy	European Bioinformatics Institute ⓘ Wellcome Sanger Institute ⓘ
supportsSpecies	Arabidopsis thaliana ⓘ Danio rerio ⓘ Drosophila melanogaster ⓘ Homo sapiens ⓘ Mus musculus ⓘ linked to: house mouse (Mus musculus) Saccharomyces cerevisiae ⓘ selected invertebrate species ⓘ wide range of vertebrate species ⓘ
targetUser	bioinformaticians ⓘ clinicians ⓘ research scientists ⓘ students and educators ⓘ
updateFrequency	regularly updated ⓘ
usedFor	comparative genomics analyses ⓘ functional genomics integration ⓘ gene annotation retrieval ⓘ genome browsing ⓘ variant interpretation ⓘ
website	https://www.ensembl.org ⓘ

How these facts were elicited

Referenced by (18)

Full triples — surface form annotated when it differs from this entity's canonical label.

EMBL-EBI AlphaFold Protein Structure Database → relatedTo → Ensembl ⓘ

Ewan Birney → knownFor → Ensembl genome browser ⓘ

linked to: Ensembl

Gene Ontology → usedBy → Ensembl ⓘ

subject linked to: Gene Ontology (GO)

European Bioinformatics Institute → hostsResource → Ensembl ⓘ

European Bioinformatics Institute → hostsResource → Ensembl Genomes ⓘ

linked to: Ensembl

Ensembl → hasSubProject → Ensembl Genomes ⓘ

linked to: Ensembl

Ensembl → hasSubProject → Ensembl Plants ⓘ

linked to: Ensembl

Ensembl → hasSubProject → Ensembl Metazoa ⓘ

linked to: Ensembl

Ensembl → hasSubProject → Ensembl Fungi ⓘ

linked to: Ensembl

Ensembl → hasSubProject → Ensembl Protists ⓘ

linked to: Ensembl

Ensembl → hasSubProject → Ensembl Bacteria ⓘ

linked to: Ensembl

UniParc → aggregatesFrom → Ensembl ⓘ

Pfam domain → usedBy → Ensembl ⓘ

subject linked to: Pfam domains

InterPro entry → usedBy → Ensembl ⓘ

subject linked to: InterPro entries

InterPro entry → usedBy → Ensembl Genomes ⓘ

subject linked to: InterPro entries

linked to: Ensembl

UniProtKB/TrEMBL → linkedTo → Ensembl ⓘ

Reactome pathways → linkedTo → Ensembl ⓘ

UniProt Knowledgebase → integratesWith → Ensembl ⓘ

All labels observed (8)

How this entity was disambiguated Show

Statements (59)

How these facts were elicited Show

Referenced by (18)

How this entity was disambiguated

How these facts were elicited