InterPro entries
E736822
InterPro entries are curated records in the InterPro database that integrate diverse protein family, domain, and functional site signatures to provide unified functional and structural annotations for protein sequences.
All labels observed (2)
| Label | Occurrences |
|---|---|
| InterPro | 3 |
| InterPro entries canonical | 1 |
How this entity was disambiguated
This entity first appeared as the object of triple T8482785 — resolving that mention is where its identity was fixed. The disambiguator weighed these candidate entities and picked the highlighted one (or “None”, minting a new entity). This is how homonymy is resolved: the same surface form can point to different entities.
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: InterPro entries Context triple: [UniProt protein sequences, linkedTo, InterPro entries]
-
A.
Protein database
The Protein database is a curated collection of protein sequences and related functional, structural, and bibliographic information maintained by the National Center for Biotechnology Information (NCBI).
-
B.
UniProt protein sequences
UniProt protein sequences are a comprehensive, curated collection of protein sequence data that serves as a primary reference resource for protein information in biological and biomedical research.
-
C.
Gene Ontology (GO)
Gene Ontology (GO) is a major bioinformatics initiative that provides a structured, controlled vocabulary to describe gene and gene product attributes across species in terms of their molecular functions, biological processes, and cellular components.
-
D.
Conserved Domain Database
The Conserved Domain Database is an NCBI-curated resource that catalogs and annotates conserved protein domains to support functional and evolutionary analysis of protein sequences.
-
E.
BioProject database
The BioProject database is an NCBI resource that organizes and links together data from large-scale biological research projects, such as genome sequencing and functional genomics studies.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: InterPro entries Target entity description: InterPro entries are curated records in the InterPro database that integrate diverse protein family, domain, and functional site signatures to provide unified functional and structural annotations for protein sequences.
-
A.
Protein database
The Protein database is a curated collection of protein sequences and related functional, structural, and bibliographic information maintained by the National Center for Biotechnology Information (NCBI).
-
B.
UniProt protein sequences
UniProt protein sequences are a comprehensive, curated collection of protein sequence data that serves as a primary reference resource for protein information in biological and biomedical research.
-
C.
Gene Ontology (GO)
Gene Ontology (GO) is a major bioinformatics initiative that provides a structured, controlled vocabulary to describe gene and gene product attributes across species in terms of their molecular functions, biological processes, and cellular components.
-
D.
Conserved Domain Database
The Conserved Domain Database is an NCBI-curated resource that catalogs and annotates conserved protein domains to support functional and evolutionary analysis of protein sequences.
-
E.
BioProject database
The BioProject database is an NCBI resource that organizes and links together data from large-scale biological research projects, such as genome sequencing and functional genomics studies.
- F. None of above. chosen
Statements (51)
| Predicate | Object |
|---|---|
| instanceOf |
bioinformatics data object
ⓘ
database record ⓘ |
| associatedWith | protein sequence ⓘ |
| curatedBy | InterPro curators ⓘ |
| describes |
protein domain
ⓘ
protein family ⓘ protein functional site ⓘ protein repeat ⓘ |
| hasAnnotation |
evolutionary relationships
ⓘ
protein function ⓘ protein structure ⓘ |
| hasDomain | protein bioinformatics ⓘ |
| hasEntryType |
domain
ⓘ
family ⓘ homologous superfamily ⓘ repeat ⓘ site ⓘ |
| hasField |
GO annotations
ⓘ
abstract ⓘ cross-references ⓘ entry name ⓘ entry type ⓘ member database signatures ⓘ protein matches ⓘ short name ⓘ taxonomic scope ⓘ |
| hasIdentifier | InterPro accession ⓘ |
| hasPurpose |
functional annotation of protein sequences
ⓘ
structural annotation of protein sequences ⓘ |
| identifierFormat | IPR followed by six digits ⓘ |
| integrates |
CDD signatures
ⓘ
Gene3D signatures ⓘ PANTHER signatures ⓘ PRINTS signatures ⓘ PROSITE signatures ⓘ Pfam signatures ⓘ
linked to:
Pfam domains
SMART signatures ⓘ
linked to:
SMART
SUPERFAMILY signatures ⓘ TIGRFAMs signatures ⓘ
linked to:
TIGRFAMs
protein signatures ⓘ |
| linkedTo | InterProScan results ⓘ |
| maintainedBy |
EMBL-EBI
ⓘ
linked to:
European Bioinformatics Institute
European Bioinformatics Institute ⓘ |
| partOf |
InterPro
ⓘ
linked to:
InterPro entries
|
| usedBy |
Ensembl
ⓘ
Ensembl Genomes ⓘ
linked to:
Ensembl
UniProt ⓘ
linked to:
UniProt Knowledgebase
|
| usedFor |
automatic protein function prediction
ⓘ
domain architecture analysis ⓘ genome annotation ⓘ protein classification ⓘ |
How these facts were elicited
The pipeline generated the facts above by prompting gpt-5.1 with this entity's name + description and the instruction below.
Instruction
You are a knowledge base construction expert. Given a subject entity and a description of it, return factual statements that you know for the subject as a JSON list of dictionaries(triples), where keys must be "subject", "predicate" and "object". The number of facts may be very high, between 25 to 50 or more, for very popular subjects. For less popular subjects, the number of facts can be very low, like 5 or 10. # Requirements - If you don't know the subject at all, return an empty list. - If the subject is not a named entity, return an empty list. - Include at least one triple where predicate is "instanceOf". - Do not get too wordy. - Separate several objects into multiple triples with one object.
Input
Subject: InterPro entries Description of subject: InterPro entries are curated records in the InterPro database that integrate diverse protein family, domain, and functional site signatures to provide unified functional and structural annotations for protein sequences.
Referenced by (4)
Full triples — surface form annotated when it differs from this entity's canonical label.