UniProtKB/TrEMBL
E739005
UniProtKB/TrEMBL is a computationally annotated section of the UniProt Knowledgebase that contains large-scale, unreviewed protein sequence records awaiting expert curation.
All labels observed (1)
| Label | Occurrences |
|---|---|
| UniProtKB/TrEMBL canonical | 6 |
How this entity was disambiguated
This entity first appeared as the object of triple T8482750 — resolving that mention is where its identity was fixed. The disambiguator weighed these candidate entities and picked the highlighted one (or “None”, minting a new entity). This is how homonymy is resolved: the same surface form can point to different entities.
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: UniProtKB/TrEMBL Context triple: [UniProt protein sequences, organizedIn, UniProtKB/TrEMBL]
-
A.
UniProtKB/Swiss-Prot
UniProtKB/Swiss-Prot is the manually curated, high-quality section of the UniProt Knowledgebase that provides reviewed protein sequence and functional annotation data.
-
B.
UniRef
UniRef is a set of clustered protein sequence databases derived from UniProt that group similar sequences to reduce redundancy and speed up sequence similarity searches.
-
C.
UniProt protein sequences
UniProt protein sequences are a comprehensive, curated collection of protein sequence data that serves as a primary reference resource for protein information in biological and biomedical research.
-
D.
Protein Information Resource
Protein Information Resource is a bioinformatics resource center that curates, annotates, and provides access to comprehensive protein sequence and functional information for the scientific community.
-
E.
UniProt Consortium
The UniProt Consortium is an international collaboration of bioinformatics organizations responsible for maintaining and curating the UniProt protein sequence and functional annotation database.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: UniProtKB/TrEMBL Target entity description: UniProtKB/TrEMBL is a computationally annotated section of the UniProt Knowledgebase that contains large-scale, unreviewed protein sequence records awaiting expert curation.
-
A.
UniProtKB/Swiss-Prot
UniProtKB/Swiss-Prot is the manually curated, high-quality section of the UniProt Knowledgebase that provides reviewed protein sequence and functional annotation data.
-
B.
UniRef
UniRef is a set of clustered protein sequence databases derived from UniProt that group similar sequences to reduce redundancy and speed up sequence similarity searches.
-
C.
UniProt protein sequences
UniProt protein sequences are a comprehensive, curated collection of protein sequence data that serves as a primary reference resource for protein information in biological and biomedical research.
-
D.
Protein Information Resource
Protein Information Resource is a bioinformatics resource center that curates, annotates, and provides access to comprehensive protein sequence and functional information for the scientific community.
-
E.
UniProt Consortium
The UniProt Consortium is an international collaboration of bioinformatics organizations responsible for maintaining and curating the UniProt protein sequence and functional annotation database.
- F. None of above. chosen
Statements (53)
| Predicate | Object |
|---|---|
| instanceOf |
bioinformatics resource
ⓘ
protein sequence database ⓘ |
| accessibleVia |
UniProt REST API
ⓘ
UniProt website ⓘ |
| awaitsCurationStatus | expert curation ⓘ |
| contrastedWith | UniProtKB/Swiss-Prot ⓘ |
| coversTaxa |
archaea
ⓘ
bacteria ⓘ eukaryotes ⓘ viruses ⓘ |
| downloadableFrom | UniProt FTP site ⓘ |
| expandsTo |
Translated EMBL
ⓘ
linked to:
TrEMBL
|
| hasAcronym | TrEMBL ⓘ |
| hasCharacteristic |
automatically annotated
ⓘ
computationally annotated ⓘ large-scale ⓘ unreviewed ⓘ |
| hasCurationLevel | unreviewed entries ⓘ |
| hasEntryType | protein sequence record ⓘ |
| hasFullName |
UniProt Knowledgebase TrEMBL
ⓘ
linked to:
UniProt Knowledgebase
|
| hasPrimaryKey | UniProt accession ⓘ |
| hasScope |
functional annotation
ⓘ
protein sequences ⓘ |
| hasUpdateFrequency | regular releases ⓘ |
| linkedTo |
Ensembl
ⓘ
RefSeq ⓘ UniParc ⓘ UniProtKB/Swiss-Prot ⓘ |
| maintainedBy |
European Bioinformatics Institute
ⓘ
Protein Information Resource ⓘ Swiss Institute of Bioinformatics ⓘ UniProt Consortium ⓘ |
| originatesFrom |
EMBL nucleotide sequence data
ⓘ
INSDC nucleotide sequence submissions ⓘ |
| partOf |
UniProt Knowledgebase
ⓘ
UniProtKB ⓘ
linked to:
UniProt Knowledgebase
|
| provides |
GO term annotations
ⓘ
cross-references to external databases ⓘ protein functional annotation ⓘ protein names and gene names ⓘ sequence features ⓘ taxonomic information ⓘ |
| usedFor |
comparative genomics
ⓘ
functional prediction of proteins ⓘ genome annotation ⓘ proteome analysis ⓘ |
| usesAnnotationSystem |
HAMAP
ⓘ
SAAS ⓘ UniRule ⓘ |
| usesEvidenceCodes |
Automatic annotation
ⓘ
Inferred from homology ⓘ |
| usesFormat |
FASTA
ⓘ
UniProt flat file format ⓘ
linked to:
UniProt flat file
|
How these facts were elicited
The pipeline generated the facts above by prompting gpt-5.1 with this entity's name + description and the instruction below.
Instruction
You are a knowledge base construction expert. Given a subject entity and a description of it, return factual statements that you know for the subject as a JSON list of dictionaries(triples), where keys must be "subject", "predicate" and "object". The number of facts may be very high, between 25 to 50 or more, for very popular subjects. For less popular subjects, the number of facts can be very low, like 5 or 10. # Requirements - If you don't know the subject at all, return an empty list. - If the subject is not a named entity, return an empty list. - Include at least one triple where predicate is "instanceOf". - Do not get too wordy. - Separate several objects into multiple triples with one object.
Input
Subject: UniProtKB/TrEMBL Description of subject: UniProtKB/TrEMBL is a computationally annotated section of the UniProt Knowledgebase that contains large-scale, unreviewed protein sequence records awaiting expert curation.
Referenced by (6)
Full triples — surface form annotated when it differs from this entity's canonical label.