Statements (101)
| Predicate | Object |
|---|---|
| gptkbp:instanceOf |
genomic dataset
|
| gptkbp:accessibleBy |
gptkb:FireBrowse
gptkb:UCSC_Xena gptkb:cBioPortal gptkb:GDC_Data_Portal |
| gptkbp:coversCancerType |
gptkb:cancer
gptkb:acute_myeloid_leukemia gptkb:endometrial_cancer gptkb:glioblastoma gptkb:rhabdomyosarcoma gptkb:uveal_melanoma esophageal cancer liver cancer melanoma mesothelioma pancreatic cancer prostate cancer stomach cancer testicular cancer colon cancer bladder cancer adrenocortical carcinoma cholangiocarcinoma head and neck cancer kidney cancer pheochromocytoma and paraganglioma rectal cancer thymoma |
| gptkbp:coversDisease |
gptkb:cancer
|
| gptkbp:dataReleasePolicy |
open access (some data controlled)
|
| gptkbp:fullName |
The Cancer Genome Atlas data
|
| gptkbp:fundedBy |
gptkb:National_Institutes_of_Health
gptkb:National_Cancer_Institute gptkb:National_Human_Genome_Research_Institute |
| gptkbp:hasType |
DNA sequencing
clinical data genomic data DNA methylation RNA sequencing clinical metadata copy number variation molecular data protein expression microRNA expression histopathology images |
| gptkbp:hostedBy |
gptkb:National_Cancer_Institute
gptkb:Genomic_Data_Commons |
| https://www.w3.org/2000/01/rdf-schema#label |
TCGA data
|
| gptkbp:notableCollection |
gptkb:The_Cancer_Genome_Atlas_(TCGA)_project
|
| gptkbp:numberOfCancerTypes |
33
|
| gptkbp:numberOfSamples |
over 11,000
|
| gptkbp:startYear |
2006
2017 |
| gptkbp:usedFor |
cancer research
precision medicine survival analysis translational research biomarker discovery cancer genomics comparative genomics bioinformatics research gene expression profiling alternative splicing analysis epigenetic studies mutation analysis integrative multi-omics analysis tumor microenvironment studies genotype-phenotype association therapeutic target identification pathway analysis multi-omics data integration alternative polyadenylation analysis cancer driver gene identification cancer risk prediction cancer subtype classification chromothripsis analysis clinical outcome prediction copy number alteration analysis drug response studies gene fusion detection genomic instability analysis immune cell infiltration analysis immune profiling integrative network analysis long non-coding RNA analysis machine learning in cancer microRNA-mRNA interaction analysis mutation burden analysis mutation co-occurrence analysis mutation signature analysis mutational process analysis oncogene discovery pan-cancer analysis prognostic model development telomere length analysis tumor evolution studies tumor heterogeneity analysis tumor purity estimation tumor suppressor gene identification |
| gptkbp:bfsParent |
gptkb:FireBrowse
|
| gptkbp:bfsLayer |
6
|