CRAM

GPTKB entity

Statements (29)
Predicate Object
gptkbp:instanceOf file format
gptkbp:alternativeTo gptkb:SAM
BAM
gptkbp:canStore sequence data
auxiliary tags
quality scores
alignment information
read names
gptkbp:developedBy gptkb:European_Bioinformatics_Institute
gptkbp:fileExtension .cram
gptkbp:firstReleased 2011
gptkbp:hasVersion 3.0
3.1
4.0 (draft)
https://www.w3.org/2000/01/rdf-schema#label CRAM
gptkbp:openFormat true
gptkbp:requires reference genome for full decompression
gptkbp:specifies https://samtools.github.io/hts-specs/CRAMv3.pdf
gptkbp:supports gptkb:htslib
lossless compression
lossy compression
compression
reference-based compression
samtools
gptkbp:used_in bioinformatics
gptkbp:usedFor storing DNA sequence alignments
gptkbp:bfsParent gptkb:Clustal
gptkb:SAMtools
gptkbp:bfsLayer 6