Statements (35)
| Predicate | Object |
|---|---|
| gptkbp:instanceOf |
gptkb:software
|
| gptkbp:abbreviation |
gptkb:GATK
|
| gptkbp:application |
next-generation sequencing data
genome analysis variant discovery |
| gptkbp:citation |
McKenna et al., Genome Research, 2010
|
| gptkbp:developer |
gptkb:Broad_Institute
|
| gptkbp:feature |
gptkb:HaplotypeCaller
gptkb:Mutect2 joint genotyping data pre-processing Base Quality Score Recalibration Best Practices workflows Variant Quality Score Recalibration support for BAM/CRAM/VCF formats |
| gptkbp:firstReleased |
2010
|
| https://www.w3.org/2000/01/rdf-schema#label |
Genome Analysis Toolkit
|
| gptkbp:latestReleaseVersion |
4.x
|
| gptkbp:license |
gptkb:BSD_3-Clause
|
| gptkbp:operatingSystem |
gptkb:Windows
gptkb:macOS gptkb:Linux |
| gptkbp:programmingLanguage |
gptkb:Java
gptkb:Python |
| gptkbp:repository |
https://github.com/broadinstitute/gatk
|
| gptkbp:supports |
human genome
model organisms non-model organisms |
| gptkbp:usedFor |
SNP calling
germline variant calling indel calling somatic variant calling |
| gptkbp:website |
https://gatk.broadinstitute.org/
|
| gptkbp:bfsParent |
gptkb:GATK
|
| gptkbp:bfsLayer |
7
|