Properties (59)
| Predicate | Object |
|---|---|
| gptkbp:instanceOf |
file format
|
| gptkbp:basedOn |
the Variant Call Format specification
|
| gptkbp:can_be |
deletions
single nucleotide polymorphisms (SNPs) insertions structural variants |
| gptkbp:compatibleWith |
BCF_format
|
| gptkbp:compressionRatio |
bgzip
|
| gptkbp:contains |
header section
data section |
| gptkbp:evaluates |
variant pathogenicity
|
| https://www.w3.org/2000/01/rdf-schema#label |
VCF
|
| gptkbp:humanInteraction |
true
|
| gptkbp:includes |
genotype information
quality scores FORMAT fields INFO fields filter information |
| gptkbp:is_a_popular_spot_for |
other_formats_like_CSV
|
| gptkbp:is_accessible_by |
true
|
| gptkbp:is_available_in |
gptkb:tabix
genomic browsers |
| gptkbp:is_designed_to |
genomic research collaboration
|
| gptkbp:is_part_of |
the_GATK_best_practices
|
| gptkbp:is_popular_among |
variant calling software
|
| gptkbp:is_supported_by |
gptkb:the_Exome_Aggregation_Consortium
various software tools the 1000 Genomes Project the Genome Aggregation Database |
| gptkbp:is_used_in |
clinical trials
bioinformatics comparative genomics functional genomics pharmacogenomics transcriptomics genome sequencing projects metagenomics cancer genomics phenotypic data population genetics studies storing genetic variation data genetic variants clinical genomics microbial genomics environmental genomics population health studies agricultural genomics evolutionary biology studies rare disease research genetic test results genetic variant databases genome assembly data share genomic data |
| gptkbp:isNotableFor |
external databases
|
| gptkbp:produces |
gptkb:The_Genome_Analysis_Toolkit
|
| gptkbp:standardFeatures |
the_Global_Alliance_for_Genomics_and_Health
|
| gptkbp:supports |
multiple samples
|
| gptkbp:track |
variant frequency
|
| gptkbp:uses |
tab-delimited text format
|