Triple
T8482750
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | UniProt protein sequences |
E200557
|
entity |
| Predicate | organizedIn |
P8619
|
FINISHED |
| Object |
UniProtKB/TrEMBL
UniProtKB/TrEMBL is a computationally annotated section of the UniProt Knowledgebase that contains large-scale, unreviewed protein sequence records awaiting expert curation.
|
E739005
|
NE FINISHED |
How this triple was built (4 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: UniProtKB/TrEMBL | Statement: [UniProt protein sequences, organizedIn, UniProtKB/TrEMBL]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: UniProtKB/TrEMBL Context triple: [UniProt protein sequences, organizedIn, UniProtKB/TrEMBL]
-
A.
UniProtKB/Swiss-Prot
UniProtKB/Swiss-Prot is the manually curated, high-quality section of the UniProt Knowledgebase that provides reviewed protein sequence and functional annotation data.
-
B.
UniRef
UniRef is a set of clustered protein sequence databases derived from UniProt that group similar sequences to reduce redundancy and speed up sequence similarity searches.
-
C.
UniProt protein sequences
UniProt protein sequences are a comprehensive, curated collection of protein sequence data that serves as a primary reference resource for protein information in biological and biomedical research.
-
D.
Protein Information Resource
Protein Information Resource is a bioinformatics resource center that curates, annotates, and provides access to comprehensive protein sequence and functional information for the scientific community.
-
E.
UniProt Consortium
The UniProt Consortium is an international collaboration of bioinformatics organizations responsible for maintaining and curating the UniProt protein sequence and functional annotation database.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg
Description generation
gpt-5.1
Instruction
Generate a one-sentence description of the target entity. You are given a context triple in the form (subject, predicate, object), where the object is the target entity. # Instructions Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. Avoid repeating the information from the triple, unless really essential. # Response Format Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: UniProtKB/TrEMBL Triple: [UniProt protein sequences, organizedIn, UniProtKB/TrEMBL]
Generated description
UniProtKB/TrEMBL is a computationally annotated section of the UniProt Knowledgebase that contains large-scale, unreviewed protein sequence records awaiting expert curation.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: UniProtKB/TrEMBL Target entity description: UniProtKB/TrEMBL is a computationally annotated section of the UniProt Knowledgebase that contains large-scale, unreviewed protein sequence records awaiting expert curation.
-
A.
UniProtKB/Swiss-Prot
UniProtKB/Swiss-Prot is the manually curated, high-quality section of the UniProt Knowledgebase that provides reviewed protein sequence and functional annotation data.
-
B.
UniRef
UniRef is a set of clustered protein sequence databases derived from UniProt that group similar sequences to reduce redundancy and speed up sequence similarity searches.
-
C.
UniProt protein sequences
UniProt protein sequences are a comprehensive, curated collection of protein sequence data that serves as a primary reference resource for protein information in biological and biomedical research.
-
D.
Protein Information Resource
Protein Information Resource is a bioinformatics resource center that curates, annotates, and provides access to comprehensive protein sequence and functional information for the scientific community.
-
E.
UniProt Consortium
The UniProt Consortium is an international collaboration of bioinformatics organizations responsible for maintaining and curating the UniProt protein sequence and functional annotation database.
- F. None of above. chosen
Provenance (5 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69ca831b17988190a1f3f3413d57b820 |
completed | March 30, 2026, 2:05 p.m. |
| NER | Named-entity recognition | batch_69cbe53845e881909eeb32863c7aa942 |
completed | March 31, 2026, 3:16 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69ce4de95e3081908277c65598f3884a |
completed | April 2, 2026, 11:07 a.m. |
| NEDg | Description generation | batch_69ce5028c38c81908e81390d0be21387 |
completed | April 2, 2026, 11:16 a.m. |
| NED2 | Entity disambiguation (via description) | batch_69ce517fea7c819098d0343fd2c4ccdd |
completed | April 2, 2026, 11:22 a.m. |
Created at: March 30, 2026, 6:12 p.m.