Triple

T8482785
Position Surface form Disambiguated ID Type / Status
Subject UniProt protein sequences E200557 entity
Predicate linkedTo P37 FINISHED
Object InterPro entries
InterPro entries are curated records in the InterPro database that integrate diverse protein family, domain, and functional site signatures to provide unified functional and structural annotations for protein sequences.
 E736822 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: InterPro entries | Statement: [UniProt protein sequences, linkedTo, InterPro entries]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07 
Target entity: InterPro entries
Context triple: [UniProt protein sequences, linkedTo, InterPro entries]
  • A. Protein database
    The Protein database is a curated collection of protein sequences and related functional, structural, and bibliographic information maintained by the National Center for Biotechnology Information (NCBI).
  • B. UniProt protein sequences
    UniProt protein sequences are a comprehensive, curated collection of protein sequence data that serves as a primary reference resource for protein information in biological and biomedical research.
  • C. Gene Ontology (GO)
    Gene Ontology (GO) is a major bioinformatics initiative that provides a structured, controlled vocabulary to describe gene and gene product attributes across species in terms of their molecular functions, biological processes, and cellular components.
  • D. Conserved Domain Database
    The Conserved Domain Database is an NCBI-curated resource that catalogs and annotates conserved protein domains to support functional and evolutionary analysis of protein sequences.
  • E. BioProject database
    The BioProject database is an NCBI resource that organizes and links together data from large-scale biological research projects, such as genome sequencing and functional genomics studies.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: InterPro entries
Triple: [UniProt protein sequences, linkedTo, InterPro entries]
Generated description
InterPro entries are curated records in the InterPro database that integrate diverse protein family, domain, and functional site signatures to provide unified functional and structural annotations for protein sequences.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07 
Target entity: InterPro entries
Target entity description: InterPro entries are curated records in the InterPro database that integrate diverse protein family, domain, and functional site signatures to provide unified functional and structural annotations for protein sequences.
  • A. Protein database
    The Protein database is a curated collection of protein sequences and related functional, structural, and bibliographic information maintained by the National Center for Biotechnology Information (NCBI).
  • B. UniProt protein sequences
    UniProt protein sequences are a comprehensive, curated collection of protein sequence data that serves as a primary reference resource for protein information in biological and biomedical research.
  • C. Gene Ontology (GO)
    Gene Ontology (GO) is a major bioinformatics initiative that provides a structured, controlled vocabulary to describe gene and gene product attributes across species in terms of their molecular functions, biological processes, and cellular components.
  • D. Conserved Domain Database
    The Conserved Domain Database is an NCBI-curated resource that catalogs and annotates conserved protein domains to support functional and evolutionary analysis of protein sequences.
  • E. BioProject database
    The BioProject database is an NCBI resource that organizes and links together data from large-scale biological research projects, such as genome sequencing and functional genomics studies.
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69ca831b17988190a1f3f3413d57b820 completed March 30, 2026, 2:05 p.m.
NER Named-entity recognition batch_69cbe53845e881909eeb32863c7aa942 completed March 31, 2026, 3:16 p.m.
NED1 Entity disambiguation (via context triple) batch_69ce3a2b2e9081909f19712946c6ec20 completed April 2, 2026, 9:43 a.m.
NEDg Description generation batch_69ce3b4008a0819096bb44b46f510213 completed April 2, 2026, 9:47 a.m.
NED2 Entity disambiguation (via description) batch_69ce3c000e608190adf1b6499d382529 completed April 2, 2026, 9:50 a.m.
Created at: March 30, 2026, 6:12 p.m.