Gene Set Enrichment Analysis

GPTKB entity

Predicate	Object
gptkbp:instanceOf	bioinformatics method
gptkbp:abbreviation	gptkb:GSEA
gptkbp:alternativeTo	gptkb:DAVID gptkb:Enrichr GO enrichment analysis
gptkbp:analyzes	gptkb:RNA-seq_data gene sets microarray data
gptkbp:canBe	cancer research drug discovery disease mechanism studies
gptkbp:citation	Subramanian, A. et al. (2005) PNAS 102(43):15545-15550
gptkbp:developedBy	gptkb:Eric_S._Lander gptkb:Jill_P._Mesirov gptkb:Aravind_Subramanian gptkb:J.P._Mesirov gptkb:Pablo_Tamayo gptkb:Vamsi_K._Mootha
https://www.w3.org/2000/01/rdf-schema#label	Gene Set Enrichment Analysis
gptkbp:input	ranked list of genes
gptkbp:license	free for academic use
gptkbp:output	enrichment score false discovery rate significance p-value
gptkbp:platform	gptkb:Java gptkb:mobile_application command line
gptkbp:publishedIn	gptkb:Proceedings_of_the_National_Academy_of_Sciences 2005
gptkbp:recognizedBy	biological pathways functional gene sets
gptkbp:relatedTo	systems biology functional genomics gene ontology
gptkbp:requires	gene expression profiles gene set database
gptkbp:software_available_at	gptkb:Broad_Institute
gptkbp:supports	gptkb:MSigDB_gene_sets
gptkbp:type	gptkb:permutation_test statistical analysis Kolmogorov-Smirnov-like statistic
gptkbp:usedFor	interpreting gene expression data
gptkbp:website	https://www.gsea-msigdb.org/
gptkbp:bfsParent	gptkb:Jill_P._Mesirov
gptkbp:bfsLayer	6