|
gptkbp:instanceOf
|
bioinformatics method
|
|
gptkbp:alternativeTo
|
Over-Representation Analysis
|
|
gptkbp:category
|
gptkb:software
computational biology
gene set analysis
|
|
gptkbp:citation
|
10.1073/pnas.0506580102
>20000
thousands of scientific publications
|
|
gptkbp:developedBy
|
gptkb:Jill_P._Mesirov
gptkb:Aravind_Subramanian
|
|
gptkbp:documentation
|
https://www.gsea-msigdb.org/gsea/doc/GSEAUserGuideFrame.html
|
|
gptkbp:fullName
|
gptkb:Gene_Set_Enrichment_Analysis
|
|
gptkbp:fundedBy
|
gptkb:Broad_Institute
gptkb:Harvard_University
gptkb:MIT
|
|
https://www.w3.org/2000/01/rdf-schema#label
|
GSEA
|
|
gptkbp:input
|
gene sets
ranked gene list
|
|
gptkbp:inputDataType
|
gene expression profiles
|
|
gptkbp:license
|
free for academic use
|
|
gptkbp:nullHypothesis
|
Kolmogorov-Smirnov-like statistic
|
|
gptkbp:output
|
FDR q-value
enrichment plot
normalized enrichment score
|
|
gptkbp:platform
|
gptkb:graphical_user_interface
gptkb:mobile_application
Java application
|
|
gptkbp:producedDataType
|
enrichment scores
|
|
gptkbp:publicationYear
|
2005
|
|
gptkbp:publishedIn
|
gptkb:Proceedings_of_the_National_Academy_of_Sciences
Subramanian, A. et al. (2005) Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. PNAS.
|
|
gptkbp:relatedTo
|
functional genomics
pathway analysis
MSigDB
|
|
gptkbp:requires
|
gptkb:Java_Virtual_Machine
|
|
gptkbp:software
|
yes
|
|
gptkbp:supports
|
gptkb:Windows
gptkb:MacOS
gptkb:Linux
|
|
gptkbp:supportsAlgorithm
|
statistical analysis
|
|
gptkbp:usedFor
|
analyzing gene expression data
identifying enriched gene sets
|
|
gptkbp:usedIn
|
cancer research
systems biology
transcriptomics
|
|
gptkbp:website
|
https://www.gsea-msigdb.org/
|
|
gptkbp:bfsParent
|
gptkb:gene_set_enrichment_analysis
gptkb:Gene_Set_Enrichment_Analysis
|
|
gptkbp:bfsLayer
|
7
|