modENCODE project
E459329
The modENCODE project is a large-scale genomics initiative aimed at comprehensively identifying and annotating functional elements in model organisms such as Drosophila melanogaster and Caenorhabditis elegans.
All labels observed (4)
| Label | Occurrences |
|---|---|
| Model Organism Encyclopedia of DNA Elements project | 1 |
| Science 2010 modENCODE integrative analysis papers | 1 |
| modENCODE | 1 |
| modENCODE project canonical | 1 |
How this entity was disambiguated
This entity first appeared as the object of triple T4645704 — resolving that mention is where its identity was fixed. The disambiguator weighed these candidate entities and picked the highlighted one (or “None”, minting a new entity). This is how homonymy is resolved: the same surface form can point to different entities.
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: modENCODE project Context triple: [Drosophila melanogaster, hasOnlineResource, modENCODE project]
-
A.
Human Genome Project
The Human Genome Project was an international scientific research initiative that successfully mapped and sequenced the entire human DNA genome, revolutionizing genetics and biomedical research.
-
B.
Genomic Science program
The Genomic Science program is a U.S. Department of Energy research initiative that applies genomics and systems biology to understand and harness biological processes for energy, environmental, and climate-related applications.
-
C.
Hi-C
Hi-C is an American rapper from Compton, California, known for his work in West Coast hip hop and frequent collaborations with DJ Quik.
-
D.
All of Us Research Program (genomics components)
The All of Us Research Program (genomics components) is a large-scale U.S. precision medicine initiative that collects and analyzes genomic data from diverse participants to advance research on health, disease, and individualized care.
-
E.
Yamanaka factors
Yamanaka factors are a set of transcription factors that can reprogram adult somatic cells into induced pluripotent stem cells, revolutionizing regenerative medicine and stem cell research.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: modENCODE project Target entity description: The modENCODE project is a large-scale genomics initiative aimed at comprehensively identifying and annotating functional elements in model organisms such as Drosophila melanogaster and Caenorhabditis elegans.
-
A.
Human Genome Project
The Human Genome Project was an international scientific research initiative that successfully mapped and sequenced the entire human DNA genome, revolutionizing genetics and biomedical research.
-
B.
Genomic Science program
The Genomic Science program is a U.S. Department of Energy research initiative that applies genomics and systems biology to understand and harness biological processes for energy, environmental, and climate-related applications.
-
C.
Hi-C
Hi-C is an American rapper from Compton, California, known for his work in West Coast hip hop and frequent collaborations with DJ Quik.
-
D.
All of Us Research Program (genomics components)
The All of Us Research Program (genomics components) is a large-scale U.S. precision medicine initiative that collects and analyzes genomic data from diverse participants to advance research on health, disease, and individualized care.
-
E.
Yamanaka factors
Yamanaka factors are a set of transcription factors that can reprogram adult somatic cells into induced pluripotent stem cells, revolutionizing regenerative medicine and stem cell research.
- F. None of above. chosen
Statements (47)
| Predicate | Object |
|---|---|
| instanceOf |
ENCODE-related project
ⓘ
functional genomics initiative ⓘ genomics research project ⓘ |
| abbreviation |
modENCODE
ⓘ
linked to:
modENCODE project
|
| aim |
to annotate functional elements in Caenorhabditis elegans
ⓘ
to annotate functional elements in Drosophila melanogaster ⓘ to comprehensively identify functional elements in model organism genomes ⓘ |
| contributesTo |
annotation standards for functional genomics
ⓘ
understanding of gene regulation in model organisms ⓘ |
| dataRepository |
NCBI Gene Expression Omnibus
ⓘ
linked to:
GEO DataSets
UCSC Genome Browser tracks ⓘ modENCODE Data Coordination Center ⓘ
linked to:
GEO DataSets
|
| field |
bioinformatics
ⓘ
functional genomics ⓘ genomics ⓘ |
| focusesOn |
chromatin structure
ⓘ
epigenetic modifications ⓘ functional elements in the genome ⓘ gene expression ⓘ non-coding RNAs ⓘ regulatory elements ⓘ transcription factor binding sites ⓘ |
| fullName |
Model Organism Encyclopedia of DNA Elements project
ⓘ
linked to:
modENCODE project
|
| geographicScope | international collaboration ⓘ |
| hasCollaborator |
bioinformatics consortia
ⓘ
multiple academic research institutions ⓘ |
| hasOutput |
genome-wide functional annotations for Caenorhabditis elegans
ⓘ
genome-wide functional annotations for Drosophila melanogaster ⓘ publicly available genomic datasets ⓘ |
| hasPublication |
Science 2010 modENCODE integrative analysis papers
ⓘ
linked to:
modENCODE project
|
| inspiredBy | ENCODE project goals ⓘ |
| partOf | ENCODE consortium ecosystem ⓘ |
| providesResourceFor |
comparative genomics studies
ⓘ
model organism research community ⓘ regulatory network inference ⓘ |
| relatedTo | ENCODE project ⓘ |
| studiesOrganism |
Caenorhabditis elegans
ⓘ
Drosophila melanogaster ⓘ |
| supportedBy |
National Human Genome Research Institute
ⓘ
National Institutes of Health ⓘ |
| timeFrame | active mainly in late 2000s and early 2010s ⓘ |
| usesMethod |
ChIP-seq
ⓘ
RNA-seq ⓘ comparative genomics ⓘ high-throughput sequencing ⓘ tiling microarrays ⓘ |
| website | http://www.modencode.org/ ⓘ |
How these facts were elicited
The pipeline generated the facts above by prompting gpt-5.1 with this entity's name + description and the instruction below.
Instruction
You are a knowledge base construction expert. Given a subject entity and a description of it, return factual statements that you know for the subject as a JSON list of dictionaries(triples), where keys must be "subject", "predicate" and "object". The number of facts may be very high, between 25 to 50 or more, for very popular subjects. For less popular subjects, the number of facts can be very low, like 5 or 10. # Requirements - If you don't know the subject at all, return an empty list. - If the subject is not a named entity, return an empty list. - Include at least one triple where predicate is "instanceOf". - Do not get too wordy. - Separate several objects into multiple triples with one object.
Input
Subject: modENCODE project Description of subject: The modENCODE project is a large-scale genomics initiative aimed at comprehensively identifying and annotating functional elements in model organisms such as Drosophila melanogaster and Caenorhabditis elegans.
Referenced by (4)
Full triples — surface form annotated when it differs from this entity's canonical label.
linked to: modENCODE project
linked to: modENCODE project
linked to: modENCODE project