Triple

T18784103
Position Surface form Disambiguated ID Type / Status
Subject modENCODE project E459329 entity
Predicate dataRepository P1596 FINISHED
Object UCSC Genome Browser tracks
UCSC Genome Browser tracks are visual genomic data layers within the UCSC Genome Browser that display and integrate diverse experimental and annotation datasets, such as those generated by large-scale projects like modENCODE.
E1342615 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: UCSC Genome Browser tracks | Statement: [modENCODE project, dataRepository, UCSC Genome Browser tracks]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: UCSC Genome Browser tracks
Context triple: [modENCODE project, dataRepository, UCSC Genome Browser tracks]
  • A. Genome Data Viewer
    Genome Data Viewer is an NCBI web-based genome browser that allows users to visualize, explore, and analyze annotated genomic sequences and features.
  • B. Ensembl
    Ensembl is a comprehensive genome annotation and browsing platform that provides detailed, regularly updated genomic data for a wide range of species.
  • C. biomaRt package
    The biomaRt package is an R/Bioconductor tool that provides programmatic access to a wide range of biological databases via the BioMart data management system, enabling flexible retrieval and integration of genomic annotation data.
  • D. GenomicFeatures package
    The GenomicFeatures package is a Bioconductor tool in R for representing, manipulating, and annotating genomic intervals and gene models using database-backed transcript annotations.
  • E. RefSeq
    RefSeq is a curated, non-redundant collection of reference DNA, RNA, and protein sequences maintained by the National Center for Biotechnology Information for use in genome annotation and biological research.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: UCSC Genome Browser tracks
Triple: [modENCODE project, dataRepository, UCSC Genome Browser tracks]
Generated description
UCSC Genome Browser tracks are visual genomic data layers within the UCSC Genome Browser that display and integrate diverse experimental and annotation datasets, such as those generated by large-scale projects like modENCODE.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: UCSC Genome Browser tracks
Target entity description: UCSC Genome Browser tracks are visual genomic data layers within the UCSC Genome Browser that display and integrate diverse experimental and annotation datasets, such as those generated by large-scale projects like modENCODE.
  • A. Genome Data Viewer
    Genome Data Viewer is an NCBI web-based genome browser that allows users to visualize, explore, and analyze annotated genomic sequences and features.
  • B. Ensembl
    Ensembl is a comprehensive genome annotation and browsing platform that provides detailed, regularly updated genomic data for a wide range of species.
  • C. biomaRt package
    The biomaRt package is an R/Bioconductor tool that provides programmatic access to a wide range of biological databases via the BioMart data management system, enabling flexible retrieval and integration of genomic annotation data.
  • D. GenomicFeatures package
    The GenomicFeatures package is a Bioconductor tool in R for representing, manipulating, and annotating genomic intervals and gene models using database-backed transcript annotations.
  • E. RefSeq
    RefSeq is a curated, non-redundant collection of reference DNA, RNA, and protein sequences maintained by the National Center for Biotechnology Information for use in genome annotation and biological research.
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69d8d396f54c8190ba49db31e8743842 completed April 10, 2026, 10:40 a.m.
NER Named-entity recognition batch_69e5977ffa648190be5f682bba47fb0a completed April 20, 2026, 3:03 a.m.
NED1 Entity disambiguation (via context triple) batch_6a05471ae8fc8190a18870af6b487105 completed May 14, 2026, 3:52 a.m.
NEDg Description generation batch_6a054abe671c8190b9ef2d324fe23a96 completed May 14, 2026, 4:08 a.m.
NED2 Entity disambiguation (via description) batch_6a054b2bf4848190ae3329f47c30210c completed May 14, 2026, 4:10 a.m.
Created at: April 10, 2026, 11:52 a.m.