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gptkbp:instanceOf
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gptkb:software
sequence alignment tool
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gptkbp:application
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aligning DNA sequences to reference genomes
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gptkbp:citation
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over 20,000 (as of 2024)
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009;10(3):R25.
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gptkbp:developer
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gptkb:Cole_Trapnell
gptkb:Steven_Salzberg
Mihai Pop
Ben Langmead
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gptkbp:firstReleased
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2009
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https://www.w3.org/2000/01/rdf-schema#label
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Bowtie (software)
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gptkbp:latestReleaseVersion
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2023
2.5.1
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gptkbp:license
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gptkb:Artistic_License_2.0
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gptkbp:notableFeature
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low memory footprint
supports paired-end reads
supports short reads
ultra-fast alignment
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gptkbp:operatingSystem
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gptkb:Windows
gptkb:macOS
gptkb:Linux
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gptkbp:programmingLanguage
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gptkb:C++
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gptkbp:repository
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https://github.com/BenLangmead/bowtie
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gptkbp:software
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gptkb:HISAT
gptkb:TopHat
Bowtie 2
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gptkbp:supportsAlgorithm
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gptkb:Burrows-Wheeler_transform
gptkb:FM-index
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gptkbp:usedIn
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gptkb:ChIP-Seq
RNA-Seq
next-generation sequencing analysis
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gptkbp:website
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http://bowtie-bio.sourceforge.net/index.shtml
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gptkbp:bfsParent
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gptkb:Mark_Salzberg
gptkb:Steven_Salzberg
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gptkbp:bfsLayer
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8
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