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gptkbp:instanceOf
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gptkb:software
gptkb:sequence_alignment_tool
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gptkbp:category
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gptkb:sequence_alignment_software
free bioinformatics software
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gptkbp:citation
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over 20,000
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009;10(3):R25.
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gptkbp:developer
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gptkb:Cole_Trapnell
gptkb:Steven_Salzberg
Mihai Pop
Ben Langmead
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gptkbp:feature
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gptkb:graphical_user_interface
low memory usage
supports paired-end reads
supports short reads
ultrafast alignment
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gptkbp:field
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computational biology
bioinformatics
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gptkbp:firstReleased
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2009
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gptkbp:format
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gptkb:FASTQ
gptkb:FASTA
gptkb:SAM
BAM
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gptkbp:latestReleaseVersion
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2021-06-01
1.3.1
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gptkbp:license
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gptkb:Artistic_License_2.0
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gptkbp:operatingSystem
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gptkb:Windows
gptkb:macOS
gptkb:Linux
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gptkbp:programmingLanguage
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gptkb:C++
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gptkbp:repository
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https://github.com/BenLangmead/bowtie
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gptkbp:software
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gptkb:HISAT
gptkb:TopHat
Bowtie 2
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gptkbp:supportsAlgorithm
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gptkb:Burrows–Wheeler_transform
gptkb:FM-index
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gptkbp:usedFor
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aligning DNA sequences to reference genomes
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gptkbp:usedIn
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RNA-Seq analysis
ChIP-Seq analysis
next-generation sequencing analysis
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gptkbp:website
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http://bowtie-bio.sourceforge.net/index.shtml
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gptkbp:bfsParent
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gptkb:Burrows–Wheeler_transform
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gptkbp:bfsLayer
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7
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https://www.w3.org/2000/01/rdf-schema#label
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Bowtie (bioinformatics)
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