Statements (43)
| Predicate | Object |
|---|---|
| gptkbp:instanceOf |
gptkb:software
sequence alignment tool |
| gptkbp:category |
sequence alignment software
free bioinformatics software |
| gptkbp:citation |
over 20,000
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009;10(3):R25. |
| gptkbp:developer |
gptkb:Cole_Trapnell
gptkb:Steven_Salzberg Mihai Pop Ben Langmead |
| gptkbp:feature |
gptkb:graphical_user_interface
low memory usage supports paired-end reads supports short reads ultrafast alignment |
| gptkbp:field |
computational biology
bioinformatics |
| gptkbp:firstReleased |
2009
|
| gptkbp:format |
gptkb:FASTQ
gptkb:FASTA gptkb:SAM BAM |
| https://www.w3.org/2000/01/rdf-schema#label |
Bowtie (bioinformatics)
|
| gptkbp:latestReleaseVersion |
2021-06-01
1.3.1 |
| gptkbp:license |
gptkb:Artistic_License_2.0
|
| gptkbp:operatingSystem |
gptkb:Windows
gptkb:macOS gptkb:Linux |
| gptkbp:programmingLanguage |
gptkb:C++
|
| gptkbp:repository |
https://github.com/BenLangmead/bowtie
|
| gptkbp:software |
gptkb:HISAT
gptkb:TopHat Bowtie 2 |
| gptkbp:supportsAlgorithm |
gptkb:Burrows–Wheeler_transform
gptkb:FM-index |
| gptkbp:usedFor |
aligning DNA sequences to reference genomes
|
| gptkbp:usedIn |
RNA-Seq analysis
ChIP-Seq analysis next-generation sequencing analysis |
| gptkbp:website |
http://bowtie-bio.sourceforge.net/index.shtml
|
| gptkbp:bfsParent |
gptkb:Burrows–Wheeler_transform
|
| gptkbp:bfsLayer |
7
|