Triple

T3439042
Position Surface form Disambiguated ID Type / Status
Subject Yersinia pestis E72523 entity
Predicate virulenceFactor P40198 FINISHED
Object Yersinia outer proteins
Yersinia outer proteins are a group of effector proteins secreted by Yersinia bacteria via a type III secretion system that disrupt host immune responses and promote infection.
E357721 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Yersinia outer proteins | Statement: [Yersinia pestis, virulenceFactor, Yersinia outer proteins]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: Yersinia outer proteins
Context triple: [Yersinia pestis, virulenceFactor, Yersinia outer proteins]
  • A. Gammaproteobacteria
    Gammaproteobacteria is a major and diverse class of Gram-negative bacteria that includes many medically and ecologically important genera, such as Vibrio, Escherichia, and Pseudomonas.
  • B. Nourse
    Nourse is a surname and variant spelling of "Nurse," historically associated with English-speaking families and occasionally used as a place or business name.
  • C. Yersinia pestis
    Yersinia pestis is a highly virulent bacterium responsible for plague, including the historic pandemics of bubonic, septicemic, and pneumonic forms.
  • D. Vibrio cholerae
    Vibrio cholerae is a Gram-negative, comma-shaped bacterium that causes the acute diarrheal disease cholera in humans.
  • E. Pyrobaculum aerophilum
    Pyrobaculum aerophilum is a hyperthermophilic archaeon that thrives in extremely high-temperature, often sulfur-rich environments and serves as a model organism for studying the biology of Crenarchaeota.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: Yersinia outer proteins
Triple: [Yersinia pestis, virulenceFactor, Yersinia outer proteins]
Generated description
Yersinia outer proteins are a group of effector proteins secreted by Yersinia bacteria via a type III secretion system that disrupt host immune responses and promote infection.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: Yersinia outer proteins
Target entity description: Yersinia outer proteins are a group of effector proteins secreted by Yersinia bacteria via a type III secretion system that disrupt host immune responses and promote infection.
  • A. Gammaproteobacteria
    Gammaproteobacteria is a major and diverse class of Gram-negative bacteria that includes many medically and ecologically important genera, such as Vibrio, Escherichia, and Pseudomonas.
  • B. Nourse
    Nourse is a surname and variant spelling of "Nurse," historically associated with English-speaking families and occasionally used as a place or business name.
  • C. Yersinia pestis
    Yersinia pestis is a highly virulent bacterium responsible for plague, including the historic pandemics of bubonic, septicemic, and pneumonic forms.
  • D. Vibrio cholerae
    Vibrio cholerae is a Gram-negative, comma-shaped bacterium that causes the acute diarrheal disease cholera in humans.
  • E. Pyrobaculum aerophilum
    Pyrobaculum aerophilum is a hyperthermophilic archaeon that thrives in extremely high-temperature, often sulfur-rich environments and serves as a model organism for studying the biology of Crenarchaeota.
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69ad85af50288190a854b76653deee6f completed March 8, 2026, 2:20 p.m.
NER Named-entity recognition batch_69adb9f6de1481909b789f4b0e1113d3 completed March 8, 2026, 6:03 p.m.
NED1 Entity disambiguation (via context triple) batch_69b35483d0488190b6a4bd2ed65f78d3 completed March 13, 2026, 12:04 a.m.
NEDg Description generation batch_69b358b368648190840d1dee4a659a32 completed March 13, 2026, 12:22 a.m.
NED2 Entity disambiguation (via description) batch_69b3593c810c819080f5370601750133 completed March 13, 2026, 12:24 a.m.
Created at: March 8, 2026, 3:16 p.m.