Statements (24)
| Predicate | Object |
|---|---|
| gptkbp:instanceOf |
gptkb:software
|
| gptkbp:citation |
Trapnell C, Pachter L, Salzberg SL. 'TopHat: discovering splice junctions with RNA-Seq.' Bioinformatics. 2009 May 1;25(9):1105-11.
|
| gptkbp:describes |
TopHat is a bioinformatics tool for fast splice junction mapping of RNA-Seq reads.
|
| gptkbp:developer |
gptkb:Daehwan_Kim
gptkb:Steven_Salzberg Ben Langmead |
| gptkbp:field |
computational biology
genomics |
| gptkbp:genre |
RNA-Seq analysis
|
| https://www.w3.org/2000/01/rdf-schema#label |
TopHat (software)
|
| gptkbp:latestReleaseVersion |
2016-12-13
2.1.1 |
| gptkbp:license |
gptkb:Artistic_License_2.0
|
| gptkbp:operatingSystem |
gptkb:Windows
gptkb:macOS gptkb:Linux |
| gptkbp:programmingLanguage |
gptkb:Python
gptkb:C++ |
| gptkbp:replacedBy |
HISAT (software)
|
| gptkbp:uses |
gptkb:Bowtie_(software)
|
| gptkbp:website |
https://ccb.jhu.edu/software/tophat/index.shtml
|
| gptkbp:bfsParent |
gptkb:Mark_Salzberg
gptkb:Steven_Salzberg |
| gptkbp:bfsLayer |
8
|