Statements (32)
| Predicate | Object |
|---|---|
| gptkbp:instanceOf |
gptkb:software
|
| gptkbp:author |
gptkb:Bo_Li
Colin Dewey |
| gptkbp:canUseAligner |
gptkb:Bowtie
gptkb:HISAT2 gptkb:STAR |
| gptkbp:citation |
>8000
|
| gptkbp:documentation |
https://deweylab.github.io/RSEM/
|
| gptkbp:feature |
can generate simulated RNA-Seq data
estimates gene and isoform expression supports paired-end and single-end reads supports reference-based quantification provides confidence intervals for expression estimates |
| gptkbp:firstReleased |
2011
|
| gptkbp:fullName |
RNA-Seq by Expectation-Maximization
|
| https://www.w3.org/2000/01/rdf-schema#label |
RSEM
|
| gptkbp:input |
RNA-Seq reads
|
| gptkbp:license |
gptkb:GPL_v3
|
| gptkbp:output |
gene expression levels
transcript expression levels |
| gptkbp:platform |
gptkb:Windows
gptkb:macOS gptkb:Linux |
| gptkbp:publishedIn |
https://doi.org/10.1186/1471-2105-12-323
|
| gptkbp:repository |
https://github.com/deweylab/RSEM
|
| gptkbp:usedFor |
RNA-Seq data analysis
gene expression quantification transcript quantification |
| gptkbp:writtenBy |
gptkb:Perl
gptkb:C++ |
| gptkbp:bfsParent |
gptkb:tximport
|
| gptkbp:bfsLayer |
7
|