PSMC

GPTKB entity

Statements (23)
Predicate Object
gptkbp:instanceOf gptkb:algorithm
gptkbp:alternativeTo gptkb:SMC++
gptkb:MSMC
gptkbp:citation >2000
gptkbp:developedBy gptkb:Li_Heng
gptkbp:fullName gptkb:Pairwise_Sequentially_Markovian_Coalescent
https://www.w3.org/2000/01/rdf-schema#label PSMC
gptkbp:input diploid genome sequence
gptkbp:limitation assumes no recombination within segments
cannot resolve recent demographic events
gptkbp:output historical effective population size
gptkbp:publicationYear 2011
gptkbp:publishedIn gptkb:Nature
gptkbp:relatedTo population genetics
coalescent theory
demographic inference
gptkbp:requires phased or unphased diploid data
gptkbp:software https://github.com/lh3/psmc
gptkbp:usedFor inferring population history from genome sequences
gptkbp:usedIn human population history studies
non-human species demographic studies
gptkbp:bfsParent gptkb:Pak_Suzuki
gptkbp:bfsLayer 6