NCBI GEO database

GPTKB entity

Statements (51)
Predicate Object
gptkbp:instanceOf gptkb:database
gptkbp:abbreviation gptkb:GEO
gptkbp:access open access
gptkbp:citation Edgar R, Domrachev M, Lash AE. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 2002 Jan 1;30(1):207-10.
gptkbp:country gptkb:United_States
gptkbp:dataRetrieval gptkb:FTP
gptkb:REST_API
gptkb:mobile_application
gptkbp:dataSubmission private
public
gptkbp:format gptkb:TXT
gptkb:MINiML
gptkb:SOFT
CSV
gptkbp:frequency continuous
gptkbp:fullName gptkb:National_Center_for_Biotechnology_Information_Gene_Expression_Omnibus
gptkbp:hasType gptkb:Platform
gptkb:Dataset
Series
Sample
https://www.w3.org/2000/01/rdf-schema#label NCBI GEO database
gptkbp:language English
gptkbp:launched 2000
gptkbp:license public domain
gptkbp:maintainedBy gptkb:National_Institutes_of_Health
gptkb:National_Center_for_Biotechnology_Information
gptkbp:numberOfVolumes millions of samples
hundreds of thousands of studies
gptkbp:recognizedBy gptkb:GSM
gptkb:GPL
gptkb:GSE
gptkbp:relatedTo gptkb:SRA
gptkb:ArrayExpress
gptkbp:repository gptkb:archives
gptkb:dataset
gptkbp:subjectArea genomics
gene expression
functional genomics
gptkbp:type gptkb:ChIP-Seq
next-generation sequencing
DNA methylation
microarray
RNA-Seq
SNP array
gptkbp:usedFor meta-analysis
biomarker discovery
gene expression analysis
functional genomics research
gptkbp:website https://www.ncbi.nlm.nih.gov/geo/
gptkbp:bfsParent gptkb:Cap_Analysis_of_Gene_Expression_data
gptkbp:bfsLayer 7