Ensembl Variation

GPTKB entity

Statements (44)
Predicate Object
gptkbp:instanceOf bioinformatics database
gptkbp:citation Hubbard TJ et al. (2002) Genome Res. 12(6):996-1006
Hunt SE et al. (2018) Nucleic Acids Res. 46(D1):D939-D946
gptkbp:dataSource gptkb:COSMIC
gptkb:ClinVar
gptkb:ExAC
gptkb:dbSNP
gptkb:HGMD
gptkb:1000_Genomes_Project
gptkb:gnomAD
gptkbp:focusesOn genetic variation
gptkbp:format VCF
tab-delimited
GVF
gptkbp:frequency quarterly
gptkbp:hasSpecies gptkb:dog
gptkb:human
gptkb:livestock
gptkb:meat
gptkb:mouse
gptkb:zebrafish
right
other vertebrates
https://www.w3.org/2000/01/rdf-schema#label Ensembl Variation
gptkbp:maintainedBy gptkb:European_Bioinformatics_Institute
gptkbp:partOf Ensembl project
gptkbp:provides gptkb:SNPs
population genetics
structural variants
phenotype associations
indels
disease associations
copy number variants
gptkbp:providesAPIs gptkb:REST_API
gptkb:Perl_API
gptkbp:providesTools gptkb:Variant_Effect_Predictor
gptkbp:usedFor genome annotation
clinical genomics
disease research
variant interpretation
population genetics studies
gptkbp:website https://www.ensembl.org/info/genome/variation/index.html
gptkbp:bfsParent gptkb:Ensembl_genome_browser
gptkbp:bfsLayer 6