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gptkbp:instanceOf
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gptkb:software
data mining tool
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gptkbp:citation
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gptkb:Durinck_S,_et_al._(2005)_BioMart_and_Bioconductor:_a_powerful_link_between_biological_databases_and_microarray_data_analysis._Bioinformatics.
gptkb:Smedley_D,_et_al._(2009)_BioMart—biological_queries_made_easy._BMC_Genomics.
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gptkbp:developedBy
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gptkb:BioMart_Community
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gptkbp:feature
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user-friendly interface
modular architecture
data federation
integration with third-party tools
batch data retrieval
cross-database queries
customizable queries
data export in multiple formats
federated database system
filter and attribute selection
integration with Bioconductor
integration with Ensembl genome browser
integration with Galaxy platform
integration with Taverna workflow system
support for large datasets
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gptkbp:firstReleased
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2002
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|
https://www.w3.org/2000/01/rdf-schema#label
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BioMart data mining tool
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gptkbp:latestReleaseVersion
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0.9
2023
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gptkbp:license
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gptkb:GNU_GPL
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gptkbp:openSource
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true
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gptkbp:programmingLanguage
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gptkb:Java
gptkb:Perl
R
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gptkbp:provides
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gptkb:REST_API
gptkb:mobile_application
gptkb:Perl_API
R package (biomaRt)
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gptkbp:supports
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gptkb:ArrayExpress_database
gptkb:Ensembl_database
gptkb:Gramene_database
gptkb:HGNC_database
gptkb:Reactome_database
gptkb:WormBase_database
gptkb:PRIDE_database
gptkb:UniProt_database
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gptkbp:usedBy
|
biologists
bioinformaticians
computational biologists
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gptkbp:usedFor
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biological data integration
biological data mining
querying biological databases
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gptkbp:website
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https://www.biomart.org/
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gptkbp:bfsParent
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gptkb:Ensembl
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gptkbp:bfsLayer
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5
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