|
gptkbp:instanceOf
|
gptkb:database
data management platform
|
|
gptkbp:availableOn
|
gptkb:REST_API
gptkb:cloud_service
standalone software
|
|
gptkbp:citation
|
Smedley D, et al. (2009) BioMart–biological queries made easy. BMC Genomics.
|
|
gptkbp:developedBy
|
gptkb:BioMart_Community
|
|
gptkbp:firstReleased
|
2004
|
|
gptkbp:format
|
gptkb:HTML
gptkb:JSON
gptkb:BED
gptkb:GFF
gptkb:FASTA
XML
CSV
TSV
|
|
https://www.w3.org/2000/01/rdf-schema#label
|
BioMart
|
|
gptkbp:integratesWith
|
gptkb:Ensembl_Compara
gptkb:Ensembl_Regulation
gptkb:ArrayExpress
gptkb:COSMIC
gptkb:HGNC
gptkb:PDB
gptkb:UniProt
gptkb:miRBase
gptkb:WormBase
gptkb:ICGC
gptkb:ZFIN
gptkb:Ensembl
gptkb:Vega
gptkb:PRIDE
gptkb:Reactome
gptkb:Ensembl_Bacteria
gptkb:Ensembl_Fungi
gptkb:Ensembl_Genomes
gptkb:Ensembl_Metazoa
gptkb:Ensembl_Plants
gptkb:Ensembl_Protists
gptkb:Ensembl_Variation
gptkb:Gramene
gptkb:TreeFam
MGA
EMAGE
Ensembl Core
Ensembl Funcgen
Ensembl Genomes Bacteria
Ensembl Genomes Compara
Ensembl Genomes Core
Ensembl Genomes Funcgen
Ensembl Genomes Fungi
Ensembl Genomes Metazoa
Ensembl Genomes Plants
Ensembl Genomes Protists
Ensembl Genomes Regulation
Ensembl Genomes Transcriptomics
Ensembl Genomes Variation
Ensembl Genomes Viruses
Ensembl Transcriptomics
IMGT
|
|
gptkbp:license
|
gptkb:GNU_GPL
|
|
gptkbp:openSource
|
true
|
|
gptkbp:programmingLanguage
|
gptkb:Java
gptkb:JavaScript
gptkb:Perl
|
|
gptkbp:provides
|
gptkb:mobile_application
programmatic access
|
|
gptkbp:supports
|
gptkb:REST_API
gptkb:Perl_API
gptkb:SOAP_API
federated queries
R API
custom datasets
multiple output formats
BioConductor integration
complex filters
multiple biological databases
|
|
gptkbp:usedBy
|
medical researchers
software developers
biologists
geneticists
bioinformaticians
data scientists
computational biologists
|
|
gptkbp:usedFor
|
data mining
data retrieval
biological data integration
|
|
gptkbp:usedIn
|
biomedical research
genomics
proteomics
systems biology
comparative genomics
functional genomics
transcriptomics
|
|
gptkbp:website
|
https://www.biomart.org/
|
|
gptkbp:bfsParent
|
gptkb:BioMart_data_mining
gptkb:Durinck_S,_et_al._(2005)_BioMart_and_Bioconductor:_a_powerful_link_between_biological_databases_and_microarray_data_analysis._Bioinformatics.
gptkb:Smedley_D,_et_al._(2009)_BioMart—biological_queries_made_easy._BMC_Genomics.
gptkb:BME:MAP
gptkb:Ensembl_Bacteria
|
|
gptkbp:bfsLayer
|
7
|