Triple
T23448406
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | Penicillium |
E565604
|
entity |
| Predicate | notableSpecies |
P965
|
FINISHED |
| Object | Penicillium marneffei |
—
|
NE NERFINISHED |
How this triple was built (3 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Penicillium marneffei | Statement: [Penicillium, notableSpecies, Penicillium marneffei]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Penicillium marneffei Context triple: [Penicillium, notableSpecies, Penicillium marneffei]
-
A.
Blastomyces dermatitidis
Blastomyces dermatitidis is a dimorphic pathogenic fungus that causes blastomycosis, a systemic fungal infection primarily affecting the lungs and sometimes spreading to other organs in humans and animals.
-
B.
Histoplasma capsulatum
Histoplasma capsulatum is a dimorphic fungus that causes histoplasmosis, a respiratory and sometimes systemic infection typically acquired by inhaling spores from soil contaminated with bird or bat droppings.
-
C.
Cryptococcus neoformans
Cryptococcus neoformans is an encapsulated yeast-like fungal pathogen that primarily causes life-threatening meningitis and systemic infections, especially in immunocompromised individuals such as those with HIV/AIDS.
-
D.
Pseudallescheria
Pseudallescheria is a genus of filamentous fungi known for containing opportunistic human pathogens that can cause serious infections, particularly in immunocompromised individuals.
-
E.
Aspergillus fumigatus
Aspergillus fumigatus is a common airborne filamentous fungus and opportunistic human pathogen, particularly causing severe infections in immunocompromised individuals.
- F. None of above. chosen
- G. Unsure - the case is ambiguous/there is not enough information to decide.
NED2
Entity disambiguation (via description)
gpt-5-mini-2025-08-07
Target entity: Penicillium marneffei Target entity description: Penicillium marneffei is a pathogenic, dimorphic fungus that causes opportunistic systemic infections, particularly in immunocompromised individuals in Southeast Asia.
-
A.
Blastomyces dermatitidis
Blastomyces dermatitidis is a dimorphic pathogenic fungus that causes blastomycosis, a systemic fungal infection primarily affecting the lungs and sometimes spreading to other organs in humans and animals.
-
B.
Histoplasma capsulatum
Histoplasma capsulatum is a dimorphic fungus that causes histoplasmosis, a respiratory and sometimes systemic infection typically acquired by inhaling spores from soil contaminated with bird or bat droppings.
-
C.
Cryptococcus neoformans
Cryptococcus neoformans is an encapsulated yeast-like fungal pathogen that primarily causes life-threatening meningitis and systemic infections, especially in immunocompromised individuals such as those with HIV/AIDS.
-
D.
Pseudallescheria
Pseudallescheria is a genus of filamentous fungi known for containing opportunistic human pathogens that can cause serious infections, particularly in immunocompromised individuals.
-
E.
Aspergillus fumigatus
Aspergillus fumigatus is a common airborne filamentous fungus and opportunistic human pathogen, particularly causing severe infections in immunocompromised individuals.
- F. None of above. chosen
Provenance (2 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69e24584f9488190bb32730bd2ce023e |
completed | April 17, 2026, 2:36 p.m. |
| NER | Named-entity recognition | batch_69f1a64b27988190b4722425da964407 |
completed | April 29, 2026, 6:33 a.m. |
Created at: April 17, 2026, 5:52 p.m.