Triple

T22693141
Position Surface form Disambiguated ID Type / Status
Subject WDR41 E561101 entity
Predicate binds P1045 FINISHED
Object PIKfyve
PIKfyve is a lipid kinase that synthesizes phosphatidylinositol 3,5-bisphosphate and plays a key role in endosomal trafficking and lysosomal function.
E1551032 NE FINISHED

How this triple was built (4 steps)

Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.

NER Named-entity recognition gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: PIKfyve | Statement: [WDR41, binds, PIKfyve]
NED1 Entity disambiguation (via context triple) gpt-5-mini-2025-08-07
Target entity: PIKfyve
Context triple: [WDR41, binds, PIKfyve]
  • A. NPC1L1 transporter
    The NPC1L1 transporter is an intestinal membrane protein that mediates cholesterol absorption from the gut and is inhibited by the lipid-lowering drug ezetimibe.
  • B. PLCγ2
    PLCγ2 is a phospholipase C isoform that functions as a key signaling enzyme in immune cells, mediating receptor-induced calcium mobilization and downstream activation pathways.
  • C. Ezrin
    Ezrin is a Canadian music producer and songwriter best known for his work on landmark rock albums by artists such as Pink Floyd, Alice Cooper, and Kiss.
  • D. LDL receptor
    The LDL receptor is a cell-surface protein that binds and internalizes low-density lipoprotein particles, playing a central role in cholesterol homeostasis and cardiovascular disease risk.
  • E. Bruton tyrosine kinase
    Bruton tyrosine kinase is a key signaling enzyme in B cells that plays a crucial role in their development and function and is a major therapeutic target in certain blood cancers and autoimmune diseases.
  • F. None of above. chosen
  • G. Unsure - the case is ambiguous/there is not enough information to decide.
NEDg Description generation gpt-5.1
Instruction
Generate a one-sentence description of the target entity. 
You are given a context triple in the form (subject, predicate, object), where the object is the target entity. 
# Instructions
Use the triple to infer relevant information about the entity. Describe the entity based on what is most defining, well-known. 
Avoid repeating the information from the triple, unless really essential.
# Response Format
Return only the sentence: "Description: [one-sentence description of the target entity]"
Input
Entity: PIKfyve
Triple: [WDR41, binds, PIKfyve]
Generated description
PIKfyve is a lipid kinase that synthesizes phosphatidylinositol 3,5-bisphosphate and plays a key role in endosomal trafficking and lysosomal function.
NED2 Entity disambiguation (via description) gpt-5-mini-2025-08-07
Target entity: PIKfyve
Target entity description: PIKfyve is a lipid kinase that synthesizes phosphatidylinositol 3,5-bisphosphate and plays a key role in endosomal trafficking and lysosomal function.
  • A. NPC1L1 transporter
    The NPC1L1 transporter is an intestinal membrane protein that mediates cholesterol absorption from the gut and is inhibited by the lipid-lowering drug ezetimibe.
  • B. PLCγ2
    PLCγ2 is a phospholipase C isoform that functions as a key signaling enzyme in immune cells, mediating receptor-induced calcium mobilization and downstream activation pathways.
  • C. Ezrin
    Ezrin is a Canadian music producer and songwriter best known for his work on landmark rock albums by artists such as Pink Floyd, Alice Cooper, and Kiss.
  • D. LDL receptor
    The LDL receptor is a cell-surface protein that binds and internalizes low-density lipoprotein particles, playing a central role in cholesterol homeostasis and cardiovascular disease risk.
  • E. Bruton tyrosine kinase
    Bruton tyrosine kinase is a key signaling enzyme in B cells that plays a crucial role in their development and function and is a major therapeutic target in certain blood cancers and autoimmune diseases.
  • F. None of above. chosen

Provenance (5 batches)

The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.

Step Stage Batch ID Status When
creating Elicitation batch_69e2454d71b48190a1f80af9f82b6fcf completed April 17, 2026, 2:35 p.m.
NER Named-entity recognition batch_69f1789c6ae481908975b7d27e7624ac completed April 29, 2026, 3:18 a.m.
NED1 Entity disambiguation (via context triple) batch_6a0b7ece75648190a841256cf08a72f8 completed May 18, 2026, 9:04 p.m.
NEDg Description generation batch_6a0b834f488c8190bee40bd1caea0e40 completed May 18, 2026, 9:23 p.m.
NED2 Entity disambiguation (via description) batch_6a0b8717b65c819089d29c1802d1ed55 completed May 18, 2026, 9:39 p.m.
Created at: April 17, 2026, 3:13 p.m.