Triple
T14427077
| Position | Surface form | Disambiguated ID | Type / Status |
|---|---|---|---|
| Subject | pPCP1 |
E357723
|
entity |
| Predicate | carriedBy |
P2774
|
FINISHED |
| Object | Yersinia pestis biovar Orientalis strains |
E72523
|
NE FINISHED |
How this triple was built (2 steps)
Every LLM step that produced this triple, in pipeline order — named-entity classification, the disambiguation choices (the exact options shown, with the pick highlighted), and the generated description. The batch + timestamp of each is in the Provenance table below.
NER
Named-entity recognition
gpt-5-mini
Instruction
Given a phrase, classify it is english named entity (e.g., persons, organizations, works of art) in Latin script, or not (e.g., literals, dates, URLs, verbose phrases). For disambiguation, the statement where the phrase occurs as object is also given. Please return a JSON object with `phrase` (string, the phrase being analyzed) and `is_ne` (boolean, indicating whether the phrase is a Named Entity).
Input
Phrase: Yersinia pestis biovar Orientalis strains | Statement: [pPCP1, carriedBy, Yersinia pestis biovar Orientalis strains]
NED1
Entity disambiguation (via context triple)
gpt-5-mini-2025-08-07
Target entity: Yersinia pestis biovar Orientalis strains Context triple: [pPCP1, carriedBy, Yersinia pestis biovar Orientalis strains]
-
A.
Yersinia virulence plasmid pYV
Yersinia virulence plasmid pYV is a key pathogenicity plasmid in Yersinia species that carries genes essential for type III secretion and delivery of Yersinia outer proteins (Yops) into host cells, enabling immune evasion and virulence.
-
B.
Yersinia pestis
chosen
Yersinia pestis is a highly virulent bacterium responsible for plague, including the historic pandemics of bubonic, septicemic, and pneumonic forms.
-
C.
Yersinia outer proteins
Yersinia outer proteins are a group of effector proteins secreted by Yersinia bacteria via a type III secretion system that disrupt host immune responses and promote infection.
-
D.
Yersinia
Yersinia is a genus of Gram-negative bacteria that includes several pathogenic species, most notably Yersinia pestis, the causative agent of plague.
-
E.
Francisella
Francisella is a genus of small, Gram-negative, facultatively intracellular bacteria best known for including Francisella tularensis, the causative agent of tularemia.
- F. None of above.
- G. Unsure - the case is ambiguous/there is not enough information to decide.
Provenance (3 batches)
The batch behind each pipeline step, in order, with when it ran. Timestamps are batch-level — stages were processed in waves, so the object chain (NER → NED1 → NEDg → NED2) reads in order, but predicate / elicitation batches can sit in a different wave.
| Step | Stage | Batch ID | Status | When |
|---|---|---|---|---|
| creating | Elicitation | batch_69d8279402a88190821ffa39ae15bccf |
completed | April 9, 2026, 10:26 p.m. |
| NER | Named-entity recognition | batch_69de911398f08190be85bc0a8bef6b1b |
completed | April 14, 2026, 7:10 p.m. |
| NED1 | Entity disambiguation (via context triple) | batch_69fd64898c088190ab4eef32ca4f5ed6 |
completed | May 8, 2026, 4:20 a.m. |
Created at: April 10, 2026, 1:18 a.m.