Statements (53)
| Predicate | Object |
|---|---|
| gptkbp:instanceOf |
gptkb:software
|
| gptkbp:application |
epigenomics
genomics next-generation sequencing data analysis |
| gptkbp:citation |
Ramírez, F. et al. deepTools: a flexible platform for exploring deep-sequencing data. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W187-91.
|
| gptkbp:component |
alignmentSieve
bamCompare bamCoverage bamPEFragmentSize bigwigCompare computeGCBias computeMatrix correctGCBias deeptoolsintervals estimateReadFiltering multiBamSummary multiBigwigSummary plotCorrelation plotCoverage plotEnrichment plotFingerprint plotHeatmap plotPCA plotProfile |
| gptkbp:developer |
Andreas Wilm
Björn Grüning Fabian J. Theis Falko Krueger Thomas Manke |
| gptkbp:distribution |
gptkb:PyPI
gptkb:Bioconda Galaxy ToolShed |
| gptkbp:feature |
gptkb:graphical_user_interface
data normalization Galaxy integration bigWig and BAM file processing heatmap generation quality control of sequencing data visualization of sequencing data |
| gptkbp:firstReleased |
2014
|
| https://www.w3.org/2000/01/rdf-schema#label |
deepTools suite
|
| gptkbp:license |
gptkb:GPLv3
|
| gptkbp:operatingSystem |
gptkb:macOS
gptkb:Linux gptkb:Windows_(via_WSL) |
| gptkbp:programmingLanguage |
gptkb:Python
|
| gptkbp:supportsFormat |
gptkb:bedGraph
gptkb:bigWig gptkb:BED BAM |
| gptkbp:website |
https://deeptools.readthedocs.io/
|
| gptkbp:bfsParent |
gptkb:HiCExplorer
|
| gptkbp:bfsLayer |
7
|