TRONCO R package

GPTKB entity

Statements (34)
Predicate Object
gptkbp:instanceOf gptkb:software
R package
gptkbp:author gptkb:Bud_Mishra
gptkb:Giulio_Caravagna
Alex Graudenzi
Daniele Ramazzotti
Marco Antoniotti
gptkbp:availableOn gptkb:Bioconductor
gptkb:CRAN
gptkbp:category computational biology
cancer genomics
gptkbp:documentation https://cran.r-project.org/web/packages/TRONCO/index.html
https://bioconductor.org/packages/release/bioc/html/TRONCO.html
gptkbp:firstReleased 2016
gptkbp:function probabilistic graphical models
model selection
data import/export
bootstrap analysis
integration with other R packages
oncogenetic tree construction
visualization of cancer progression models
https://www.w3.org/2000/01/rdf-schema#label TRONCO R package
gptkbp:license gptkb:GPL-3
gptkbp:maintainedBy gptkb:Giulio_Caravagna
gptkbp:programmingLanguage R
gptkbp:publishedIn Caravagna G, et al. (2016) 'Algorithmic methods to infer the evolutionary trajectories in cancer progression.' PNAS.
gptkbp:supportsFormat MAF
GISTIC
custom tabular formats
gptkbp:usedFor analysis of cross-sectional genomic data
cancer progression modeling
oncogenetic tree inference
gptkbp:bfsParent gptkb:CAPRI_model
gptkbp:bfsLayer 7