Statements (34)
| Predicate | Object |
|---|---|
| gptkbp:instanceOf |
gptkb:software
gptkb:R_package |
| gptkbp:author |
gptkb:Bud_Mishra
gptkb:Giulio_Caravagna Alex Graudenzi Daniele Ramazzotti Marco Antoniotti |
| gptkbp:availableOn |
gptkb:Bioconductor
gptkb:CRAN |
| gptkbp:category |
computational biology
cancer genomics |
| gptkbp:documentation |
https://cran.r-project.org/web/packages/TRONCO/index.html
https://bioconductor.org/packages/release/bioc/html/TRONCO.html |
| gptkbp:firstReleased |
2016
|
| gptkbp:function |
probabilistic graphical models
model selection data import/export bootstrap analysis integration with other R packages oncogenetic tree construction visualization of cancer progression models |
| gptkbp:license |
gptkb:GPL-3
|
| gptkbp:maintainedBy |
gptkb:Giulio_Caravagna
|
| gptkbp:programmingLanguage |
R
|
| gptkbp:publishedIn |
Caravagna G, et al. (2016) 'Algorithmic methods to infer the evolutionary trajectories in cancer progression.' PNAS.
|
| gptkbp:supportsFormat |
MAF
GISTIC custom tabular formats |
| gptkbp:usedFor |
analysis of cross-sectional genomic data
cancer progression modeling oncogenetic tree inference |
| gptkbp:bfsParent |
gptkb:CAPRI_model
|
| gptkbp:bfsLayer |
8
|
| https://www.w3.org/2000/01/rdf-schema#label |
TRONCO R package
|