Statements (23)
| Predicate | Object |
|---|---|
| gptkbp:instanceOf |
gene expression quantification method
|
| gptkbp:alternativeTo |
TPM
FPKM |
| gptkbp:appliesTo |
single-end RNA-Seq data
|
| gptkbp:C |
number of reads mapped to a gene
|
| gptkbp:criticizedFor |
bias in multi-mapped reads
not suitable for comparing across samples |
| gptkbp:field |
genomics
bioinformatics |
| gptkbp:form |
RPKM = (10^9 * C) / (N * L)
|
| https://www.w3.org/2000/01/rdf-schema#label |
RPKM
|
| gptkbp:introduced |
Mortazavi et al.
|
| gptkbp:introducedIn |
2008
|
| gptkbp:L |
length of the gene in base pairs
|
| gptkbp:name |
total mapped reads in the experiment
|
| gptkbp:normalizesFor |
sequencing depth
gene length |
| gptkbp:replacedBy |
TPM
|
| gptkbp:standsFor |
Reads Per Kilobase of transcript, per Million mapped reads
|
| gptkbp:usedFor |
normalizing gene expression levels
|
| gptkbp:usedIn |
RNA-Seq
|
| gptkbp:bfsParent |
gptkb:RK_Puram_Metro_Station
|
| gptkbp:bfsLayer |
7
|