PyRosetta

GPTKB entity

Statements (43)
Predicate Object
gptkbp:instanceOf gptkb:software
gptkbp:basedOn gptkb:Rosetta
gptkbp:citation Chaudhury S, Lyskov S, Gray JJ. PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta. Bioinformatics. 2010.
gptkbp:developer gptkb:RosettaCommons
gptkbp:documentation https://www.pyrosetta.org/documentation
gptkbp:domain computational biology
protein modeling
gptkbp:feature gptkb:Monte_Carlo_sampling
community support
energy minimization
plugin architecture
structure refinement
docking
interactive scripting
antibody modeling
ligand docking
loop modeling
membrane protein modeling
scoring functions
access to Rosetta core functionality
custom protocol development
extensive tutorials
flexible backbone modeling
fragment insertion
integration with Jupyter notebooks
macromolecular simulation
nucleic acid modeling
parallelization support
protein-protein interaction modeling
side-chain packing
gptkbp:firstReleased 2008
https://www.w3.org/2000/01/rdf-schema#label PyRosetta
gptkbp:interface Python API
gptkbp:latestReleaseVersion 2023
gptkbp:license academic free license
gptkbp:operatingSystem cross-platform
gptkbp:programmingLanguage gptkb:Python
gptkbp:usedFor protein structure prediction
protein design
macromolecular modeling
gptkbp:website http://www.pyrosetta.org/
gptkbp:bfsParent gptkb:Rosetta_software_suite
gptkbp:bfsLayer 7