PAM matrix

GPTKB entity

Statements (21)
Predicate Object
gptkbp:instanceOf substitution matrix
gptkbp:appliesTo proteins
gptkbp:basisFor evolutionary distance
gptkbp:calculationMethod global alignments of closely related proteins
gptkbp:describes probability of amino acid substitution
gptkbp:developedBy gptkb:Margaret_Dayhoff
gptkbp:fullName Point Accepted Mutation matrix
gptkbp:grapeVariety gptkb:PAM1
gptkb:PAM250
gptkbp:hasUnit PAM (1% accepted mutations per 100 amino acids)
https://www.w3.org/2000/01/rdf-schema#label PAM matrix
gptkbp:introducedIn 1978
gptkbp:relatedTo gptkb:BLOSUM_matrix
gptkbp:type scoring matrix
gptkbp:usedFor sequence alignment
database searching
homology detection
protein evolution analysis
gptkbp:usedIn bioinformatics
gptkbp:bfsParent gptkb:Margaret_Oakley_Dayhoff
gptkbp:bfsLayer 7