PAM (Point Accepted Mutation) matrix
GPTKB entity
Statements (22)
| Predicate | Object |
|---|---|
| gptkbp:instanceOf |
substitution matrix
|
| gptkbp:alternativeName |
Point Accepted Mutation matrix
|
| gptkbp:application |
phylogenetic analysis
database searching protein sequence comparison |
| gptkbp:basisFor |
observed mutations in closely related proteins
|
| gptkbp:contrastsWith |
gptkb:BLOSUM_matrix
|
| gptkbp:describes |
evolutionary distance between protein sequences
|
| gptkbp:developedBy |
gptkb:Margaret_Dayhoff
|
| gptkbp:grapeVariety |
gptkb:PAM1
gptkb:PAM250 |
| gptkbp:hasUnit |
1 PAM = 1% average amino acid change
|
| https://www.w3.org/2000/01/rdf-schema#label |
PAM (Point Accepted Mutation) matrix
|
| gptkbp:introducedIn |
1978
|
| gptkbp:matrixRepresentation |
log-odds matrix
|
| gptkbp:relatedTo |
evolutionary biology
amino acid substitution |
| gptkbp:type |
scoring matrix
|
| gptkbp:usedFor |
sequence alignment
|
| gptkbp:usedIn |
bioinformatics
|
| gptkbp:bfsParent |
gptkb:Margaret_Oakley_Dayhoff
|
| gptkbp:bfsLayer |
7
|